Scaffold JGI25910J50241_10017080

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10017080
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2566
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003663	Metagenome / Metatranscriptome	474	Y
F005177	Metagenome / Metatranscriptome	409	Y
F049621	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_100170801	F005177	AGG	MSNRFRIEIYDENKANDLTIYSEQGVDQENFRQMVFSYLPKFQGNVKAYVYDELNKRKTVALYXPVDSRIMVRPAK*
JGI25910J50241_100170804	F049621	GAG	MAELKYFNALMNSVLGNPDQVKAAKEYLAEVDPDIWGQEE*
JGI25910J50241_100170807	F003663	AGG	MLSTAIGILDATKDSIFDEEIMGLAGELHERRNELSDETFAKYLFMYSTALSSKVADRVVKVCLTKEEMSDLCATIDEMDNLSETILEENN*