Scaffold JGI25910J50241_10013375

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10013375
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2928
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038205	Metagenome / Metatranscriptome	166	Y
F043387	Metagenome / Metatranscriptome	156	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_1001337510	F038205	AGGA	MGNLAEIIGVACDECGGAGFIFFGDEKNYDVESCDCVKDXWGI*
JGI25910J50241_1001337511	F024549	N/A	MYRLDTYYDGNLEYTHKFADALQAFEAFAKCYDVGFAKEFATYNLSMPTGKMYTKNFNRIGLVSAK*
JGI25910J50241_100133755	F043387	GAGG	MMTKWDTIQADIADQYRHLDELEALDKINAEAISDSDIVSLDEIIEQELTLDWEAYE*
JGI25910J50241_100133756	F070095	GGAGG	MEFYIDLDYVSLYVDNLYPNGIGIDIPTWVLFGTIALIYSIKLIRRDK*
JGI25910J50241_100133757	F001562	AGGAG	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYATYTASEILFNCDPIAYQIGLVEHEDYLAEMENE*