Scaffold JGI25910J50241_10003143

Overview

Basic Information

• Taxon OID: 3300003388
• Scaffold ID: JGI25910J50241_10003143
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6002
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F040629	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25910J50241_1000314310	F000671	GGA	MEKVLCYCCNKSKAALTLKKSALMPINLLLCETCITTKIEPRWVVILSGRQYGHEYVKDYVFKKRYPGEEIKASELLV*
JGI25910J50241_1000314312	F011394	N/A	MSNFIDKNKNHFKHGINQWTGEPNKPVFYTAEMSKKVRQLKSPASNLQMDIIKYPDFLAIRLYEDNFSQYDGGLKLRVIDYIEMVKNIIESYGVRVELEGKPGGRQQ*
JGI25910J50241_1000314315	F040629	N/A	MEIKAEVEAFNEEDAREYISDIFGIDEEIKSIKVISIQKKS*
JGI25910J50241_100031434	F008814	N/A	MDNKLTVLEEIIKEISEELYQKWYNAPTDVEKTKEWSEIMAKNAGETTFFIIQSFMNKFNAAAEELKDK*