Scaffold JGIcombinedJ50216_1005087

Overview

Basic Information

• Taxon OID: 3300003365
• Scaffold ID: JGIcombinedJ50216_1005087
• Source Dataset Name: Combined assembly of clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - Phoenix at KSC-PHSF (ASSEMBLY_DATE=20140826)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1868
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Phoenix, Kennedy Space Center
• Coordinates
  • Lat. (^o): 28.5853
  • Long. (^o): -80.6508

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077438	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ50216_10050876	F077438	N/A	VELSFRESRFETLFLWNLQVEISSALGPKAEKEISSYKN*