Scaffold JGI26493J50217_1034467

Overview

Basic Information

• Taxon OID: 3300003363
• Scaffold ID: JGI26493J50217_1034467
• Source Dataset Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - Phoenix Before-Phoenix assembly at KSC-PHSF (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 592
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Araneae → Araneomorphae → Entelegynae → Orbiculariae → Araneoidea → Araneidae → Araneus → Araneus ventricosus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Unclassified → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Phoenix, Kennedy Space Center
• Coordinates
  • Lat. (^o): 28.5853
  • Long. (^o): -80.6508

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005984	Metagenome	384	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26493J50217_10344671	F005984	GGAG	MVALLEVCTKEEQRAVIRFLWLEGVKGSEIYLTLSSQYGGSALS