Scaffold soilH1_10365122

Overview

Basic Information

• Taxon OID: 3300003321
• Scaffold ID: soilH1_10365122
• Source Dataset Name: Sugarcane bulk soil Sample H1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1276
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F019913	Metagenome / Metatranscriptome	227	Y
F066970	Metagenome / Metatranscriptome	126	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
soilH1_103651221	F066970	N/A	VWVQQLSSLDFLFYAAFFGVVVAAICYAVPGKAPPLREEPYPPEELGRHDARLAK
soilH1_103651222	F000280	GGAG	MARRRFLPARPLAGYRDVGQDVRHSRRNLARAWIILACLIGVYLLWTLLVYFLEPGLR*
soilH1_103651223	F090360	N/A	MAAAPPFVSYSTMSEAVVPLSQWSFLYASLQAHKAHVQEYPGCQRMEVWAALDDDGGMRLHCYTTWDTPEQLEVFLERGYTFERLLADVGSPAAERSLVMEKLF*
soilH1_103651224	F019913	AGGAGG	MAMPSGESPQHAQDFYHHLLANHQTEHRVSMWTVDWYGLAWLWGFVAALALILIWWVWQYRSTRQRDRIYPVDNWAGFTTELAGPASLFFVLLTAIITGFAVALIVGHIVNGQMF*