Scaffold soilH1_10020303

Overview

Basic Information

• Taxon OID: 3300003321
• Scaffold ID: soilH1_10020303
• Source Dataset Name: Sugarcane bulk soil Sample H1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2348
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location

• Location Name: Ayr, Queensland Australia
• Coordinates
  • Lat. (^o): -19.733298
  • Long. (^o): 147.17873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006289	Metagenome / Metatranscriptome	377	Y
F042046	Metagenome / Metatranscriptome	159	Y
F069418	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
soilH1_100203032	F069418	AGGAG	MDQPSGRPADTREFMAMWNAVTAEHLTHKLTGALQELAQRVPDAPAFGAREAEVMAPLLIHAFQVAAAKEGGVHAAVQFLVEYGAPPSPEP*
soilH1_100203034	F042046	GAGG	MRNLFALLAVCGLAGIVFGVLDLLRSAPGQAGPLPFTHEGYGGPGVIIGGLLLLGTSLYLRAAWQGRD*
soilH1_100203035	F006289	GGAG	VVLLRQLAETLAQLRAHHRRRLPFLTPAVERRRPRIAAEDYAARHTIEHTLDRKADLRRLAPLKLEAAERYAELLQYELTGLREVVAALETTAGGRDLQECLAEAREEIARLEIEVEWCQALPIRWPSTTPVH*