NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ProkHueca_1033450

Scaffold ProkHueca_1033450


Overview

Basic Information
Taxon OID3300003314 Open in IMG/M
Scaffold IDProkHueca_1033450 Open in IMG/M
Source Dataset NameHypersaline bacterial communities from Bras del Port, Santa Pola, Spain - Pena Hueca_Prokaryotes
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1448
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Samples → Hypersaline Viral And Bacterial Communities From Bras Del Port, Santa Pola, Spain

Source Dataset Sampling Location
Location NamePena Hueca, Alava, Spain
CoordinatesLat. (o)42.65689Long. (o)-2.670449Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083454Metagenome113N

Sequences

Protein IDFamilyRBSSequence
ProkHueca_10334503F083454N/AMSDKTTIGLKVSHERNARIERKVDDAGYRSRQAYIRDLIDDDLGFDSSVEATTSDQTPEDRRDAELYDALLDNISLKGWTRYERFSGDIAQSTGYSKDALFGELKSLRRNGFCTIRVLNPTDENPHYE

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