Scaffold P12013IDBA_1000318

Overview

Basic Information

• Taxon OID: 3300003312
• Scaffold ID: P12013IDBA_1000318
• Source Dataset Name: Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Campinas
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33631
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location

• Location Name: Mina do Sossego, Brazil
• Coordinates
  • Lat. (^o): -6.426389
  • Long. (^o): -50.051389

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050234	Metagenome / Metatranscriptome	145	Y
F067546	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
P12013IDBA_100031821	F050234	AGGTGG	MIPPWPLLLLMLEFPVVMALLDCWQRPADHFDQGPEDRRAWLRWLIVAVVTVPVLLGYGIVLGYYFAVVRRSSPASRS*
P12013IDBA_10003186	F067546	AGG	MTPLAEPVTVRIEDAAVVFEISDALDAATGSALVAAAESAVGTVPERVHIDLQHLRSWTPEGASSLVRCREICRDLPGGLHYRTGRGPGREALLAAYS*