Scaffold LKpool_1018764

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold LKpool_1018764

Scaffold LKpool_1018764

Overview

Basic Information
Taxon OID	3300003311 Open in IMG/M
Scaffold ID	LKpool_1018764 Open in IMG/M
Source Dataset Name	Looe Key pool
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	899
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Cnidaria → Cnidaria Microbial Communities From The Caribbean, With Black Band Disease

Source Dataset Sampling Location
Location Name	Looe Key National Marine Sanctuary, Florida, USA
Coordinates	Lat. (^o)	24.5484806	Long. (^o)	-81.4059137	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021048	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
LKpool_10187641	F021048	AGG	MVVLTLVSKKNGERIFFDEPLPKVHLAKVISCSLHNSWDTLKKEGSASLGDIQSTEGVSISNKLLPGHYDLERLAKEIDGLFVKRNYKLETEINTPVGQLVVKNFGGKNVELDRDLADLLGIHRKLKLITFVKKLSSPTTYFIHCDLIDKEKNLFNGKKSSLLAKFDVKGKAYEKVTYLSPPQEVYRECFSADEVSSITLSVKDQNGELFDFNGFEMDFVLDLN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.