Scaffold Ga0004534J46558_1028577

Overview

Basic Information

• Taxon OID: 3300003306
• Scaffold ID: Ga0004534J46558_1028577
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 1 RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1521
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y
F103496	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0004534J46558_10285772	F022008	AGGA	MTMTEIEALREALSDLSKQLQTLSDESRTSFGRIYDRLTKIETQMSEREHQFEKYERTLHNHETRIRLVEGELGTLRDVPERLWRVSMSISKLTGMVAAAGGVGGLVATIIVKMLGE*
Ga0004534J46558_10285773	F103496	AGG	MPIEDKIRKLPLTKLIALCFTIFTCVLIVLDVTSLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTTAGRKVNS*
Ga0004534J46558_10285774	F066897	GGAGG	MSSKWFWLILIAIILVSSVFLWHNHTSTQEALIKAQETIKETKQALRESQDALQRIDEITQKLQDVTRMAKEAGDKRVEEIKYISDDDFLGIVNEYSALMVERVE*