Scaffold Ga0005273J48911_1016743

Overview

Basic Information

• Taxon OID: 3300003304
• Scaffold ID: Ga0005273J48911_1016743
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_B (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 644
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005848	Metagenome / Metatranscriptome	388	Y
F016399	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0005273J48911_10167431	F016399	N/A	KRYTRSARRGTKGIGSSLKTGMIGEVVKGIGAGTLASVVVSRVAPQYAPIASVGAGFLTGGIIGGAANLLLSGGLSSLGGMFGGASAPAQEFGV*
Ga0005273J48911_10167432	F005848	AGGAG	MALPVQRTYTGTVAALNAPVFMQDNQTLQNNFLTLTPNVLQDVVMNPDLAATQLYTFTLVKNGNATSVRAFSSAISPTTAGRVPIGPVSMSSGSYQWQVTQTAGVVASPTILARYASP