Scaffold JGI25908J49247_10020471

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10020471
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1972
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004431	Metagenome / Metatranscriptome	438	Y
F029434	Metagenome / Metatranscriptome	188	Y
F050376	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100204712	F004431	AGGA	MTITYSLWDGAQLLGVDFKATSADEMNKAVAELQKVSKNVVAHMRKVEQN*
JGI25908J49247_100204714	F003690	GGA	MSINGFELVISNEYGLEFDSFLGAIYLPWHTIIITALALIAYKIYKIKRGK*
JGI25908J49247_100204716	F050376	AGAAGG	MNLDEYKAYVEATRKESLLKAIATMSEANDKMSSLFNTKEAE*
JGI25908J49247_100204717	F000447	AGGAGG	MGYVEIFRIDDEGAGWVDLSEATPNELLDLEIGLFQEGAI*
JGI25908J49247_100204718	F029434	AGG	MKKYTFGVWLDIDAEDEDMALSLFDSVVKNPFVSDSFCFEWKEVADEIAI*
JGI25908J49247_100204719	F001562	GAGG	MKSQFEIDLEIKESFIDLLNDVYPTIKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMENE*