NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10014992

Scaffold JGI25908J49247_10014992


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10014992 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2369
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F011218Metagenome / Metatranscriptome293N
F014228Metagenome264N
F015723Metagenome / Metatranscriptome252Y
F039112Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_100149921F014228N/ALNNRLAMWILPMAATLAVVSSCATVKPVLQSVIVKDTVIVTKTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGAAVMLGLILVAAYFIKKWIDKLVE*
JGI25908J49247_100149923F011218AGGMSSMQYYTNPAKRRKIDFLLEECATLMANCEDSYNARQQAKYKEQELLLEISKIDLHFAIQCGYLIPDN*
JGI25908J49247_100149924F009600N/AMRLSDPRQLKSYKVVVTKVPSLNAFYASNHWILRKKAKDLHSDEVLAQLYAYDCVQITDVHITCLVNYRYDVDNSIMAVKFALDAFKKWGAIRDDSPKYVKQIKLVHSEAITKDTAEIIFEGVIVE*
JGI25908J49247_100149925F039112N/AMTLSFSQDVYTEMVQVQQAQIQALQNKIQELEARIEVLEQQSILFI*
JGI25908J49247_100149926F015723N/AMPKIISITPTGMWQDLHKLEIRFDTGDFGTAFAKSQTPPYAVGEEVEYTKNEKGTVKIQRPNPYGSSTGSSYTPSAPKGNDERSASIIRQVALKSAVEYACAAQHDVNTILANAETFNAWMTGQSAACITHRAFRKSQRPFLIGF*
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