Scaffold JGI25908J49247_10011052

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10011052
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2802
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004432	Metagenome / Metatranscriptome	438	Y
F026856	Metagenome	196	Y
F058793	Metagenome / Metatranscriptome	134	N
F067527	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100110521	F058793	AGAAG	MDETQARLNSHEQVCTLRYEMLCARLKRLENVIMAASGVMLTGMGGIIFALMK*
JGI25908J49247_100110522	F026856	GAG	MTMWLTNHQNLCKSSDFVVIWNNLSEWAGTADSALLRHKVIQGYKNALEREKK*
JGI25908J49247_100110523	F067527	GAG	MITLDKYYPIVQPRHDIESVAFDKAVEKVQEEYKQAVQANKIEKATIELELELYNKKARVIQLELSMFKTRRLDLYA*
JGI25908J49247_100110524	F004432	AGGA	MVTKKPPAKVAPVKRRSPKTEQTINVSVAAPTKSEPKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLSFAGYFAWDSRQVLLHAITTQDKMPQLAKQENLLAPARSLLKDVDGIVLLIHKANLATNSRTTVLALNADGSREKSMEGTVTSLFNASADRNGAMVAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDLGKFAGYVAIGFKEKPEDIAALKTRINLASTDMSEE*