Scaffold JGI25908J49247_10008171

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10008171
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3297
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F061843	Metagenome	131	N
F093846	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_100081712	F015731	AGGGGG	VSVEIEKGVIDFDDNTAAWLENYKGALVKIKEWQEVADVARAHIEQSLGDAQVGMFGNRPVVRWSFIETRRFDIKRAKEILPPQVLDTLEIITNSRRFSIVDLDDEE*
JGI25908J49247_100081716	F061843	AGG	MKQSWSXVFRIFVGNDGSYNLYXEEQEACVNLVENLADEIXITDFAEMKKASGANMFDXDAAVRLDNIRKNLPPMALXIAXLSERELLDLAQEIIQIVQDKNKVSLTIVK*
JGI25908J49247_100081717	F093846	AGGGGG	MEIAIVIGAAALALVGANFATILTNGTDDWAGQVKKADRSRAKMKKALGK*