Scaffold JGI25908J49247_10004465

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10004465
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4477
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008303	Metagenome / Metatranscriptome	335	Y
F022157	Metagenome	215	Y
F031763	Metagenome	181	Y
F057982	Metagenome	135	N
F086588	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000446510	F031763	AGGAG	MKPYGYVWTKDKHEPKFFWTELEARDVQKDFGGEVVPVYK*
JGI25908J49247_100044653	F086588	GGAG	MIKYDNYDEAIIGPASIWRDQQQVGVLVYDAEIIREILMRDGMDADEAREFIEFNIEGGYLGIDTPVLVWPQDEWDAE*
JGI25908J49247_100044655	F057982	GGAGG	MTAEYKYRITYSDGCFADWDSMQKELAWAYRWGVFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITREKL*
JGI25908J49247_100044656	F022157	GAGG	MWDVAVTFMLMMFGAFTVIAFGAILIWTLYLLQNGGHDDC*
JGI25908J49247_100044659	F008303	N/A	MIDRIILSVVLSVTGYNGLYPDPPPPLTLKQKAKERSISEMCDRKTKSKTTKDLCKRWKEQQNA*