NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25908J49247_10002632

Scaffold JGI25908J49247_10002632


Overview

Basic Information
Taxon OID3300003277 Open in IMG/M
Scaffold IDJGI25908J49247_10002632 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5739
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (95.24%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F004431Metagenome / Metatranscriptome438Y
F007263Metagenome / Metatranscriptome354Y
F013527Metagenome / Metatranscriptome270Y
F039631Metagenome / Metatranscriptome163Y
F085708Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
JGI25908J49247_1000263210F001562GGAGMEKTQFEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEEE*
JGI25908J49247_1000263212F013527AGGMKTFEFLTYINVEAENYDEAIDVFQFQLKYGINKDNVYVADIKDLELAND*
JGI25908J49247_1000263213F007263GGAGMIKEYIDENEFYFIKDEIKICCDEQQFKYVCKAHGEQMGCYFCEFNYDENCEEQH*
JGI25908J49247_1000263214F000447GAGGMGFIEIFRLDENGAGWVDLSDATPDELFNIELGLLNEGALFYTPEAD*
JGI25908J49247_100026322F039631AGGAMTSLDKNTIKHSQFGHLDLGQRIRLGAEMIANGETVSFRGASAETYRLVMTLANRIKQEREFPQCPCGECD*
JGI25908J49247_100026323F004431AGAAGMTITYTIWDGVNFLGFQTANSVDEMTKTVKDLQKISKNVVAHLRKVETN*
JGI25908J49247_100026327F085708AGGMNRLLTTLVQLGIAIPALIMGRMVWREIVADYREWANSH*
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