Scaffold JGI25908J49247_10000035

Overview

Basic Information

• Taxon OID: 3300003277
• Scaffold ID: JGI25908J49247_10000035
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32803
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (76.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029419	Metagenome / Metatranscriptome	188	Y
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F041650	Metagenome	159	N
F059960	Metagenome / Metatranscriptome	133	Y
F081323	Metagenome / Metatranscriptome	114	Y
F082668	Metagenome	113	N
F091376	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25908J49247_1000003514	F059960	GGAG	MSKYIQSLLAERAGYERRGLKDRVKAVDVALREAGFDHKYMTPEIDVEVAVQELKTETASLNRGKKKKE*
JGI25908J49247_1000003517	F081323	AGGA	MTNYKVISDNCTLGKQGDNINGDDLEGLNVDALVAGGHLAEVNVKVLKQEPKEMDK*
JGI25908J49247_1000003527	F041650	GGA	MREDIQLSFIECQMPRTPYQLERFVVGQHDTPEMQFVQVCRELEALYYTIKEVGMANKKTELEIAKLRATGDEIDAIDADIKELGLERTRLVAIGARRELDELIKMYDAMPHFTRQQIDESQPDYWQARLGRQANLQMMAGGAGWAHLEALDQIGVLKPMIQAQQEKAKELL*
JGI25908J49247_1000003528	F091376	AGGA	MKYAQWTISRPEGSTPEPLIRSRGGQASGGFMKDAETVVGYVWSDCDLTGLDKWNFSTMTNTQAMTIAKGLNPECFFGDDGTIQAPQVAV*
JGI25908J49247_1000003530	F035302	N/A	MQRIYTGNKDGIATGERKGLTVFINQLCKRYPALWNNGSFVNRSMRGKQGVLSVHATGRAVDLSFRFKPNHKDSSNTKGIKEGGRKQAMQAMDFVVKHADAFGLECILDYYPIPHGRGWRCDRKAWTVYTKSEIHGAPMGDWLHFELSPKMADDAEAMRAAFSAIPLTVEAI*
JGI25908J49247_1000003531	F082668	GAGG	MDSSAIVVALIGAIGAIIVGFMQSFKKEAREANKTNSEDHAIVQSQLRMIFKTVNRVDDKLEKHINQHEEGTLNGQVTRSDKKLT*
JGI25908J49247_1000003544	F029419	AGG	MSDERKGDCQGNKEKCTLTDCPKFGTLGRPSKDGDKRVKGCADPTARGKRSRTKGLSKQRVARKRLGVAPSNKFGDANEENWQDVLFANEVKSGKQIGAVVTAWGRIDAQVRSNESDYGSRCKPTRAILMPDDWGKEGLVIIKLSTWEELVRPAMHDFYEGTA*
JGI25908J49247_1000003550	F036680	AGGAGG	MKVTKHSLDHIELVSSGDTALFEIRLVVAMNDWTDEAEDMGALDWLMNLLSLASEGTDITTGAQEFLKSMMTLSEERVHLCKVEKVDYNIDEIGNK*