Scaffold IrcVar142_1004202

Overview

Basic Information

• Taxon OID: 3300003251
• Scaffold ID: IrcVar142_1004202
• Source Dataset Name: Ircinia variabilis associated microbial communities from Achziv, Israel - Sample 142
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2907
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Ircinia Variabilis Associated → Ircinia Variabilis Associated Microbial Communities From Achziv, Israel

Source Dataset Sampling Location

• Location Name: Achziv, Israel
• Coordinates
  • Lat. (^o): 33.01
  • Long. (^o): 35.04
  • Depth (m): 5 to 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014255	Metagenome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
IrcVar142_10042022	F014255	GAG	MAEATFNRELGEAPAGITRFGQFRNDDGLNVTVNSFRSFAADGRYGLADVYEITYGSTGTATVLLNAEAFGISGIAVYKADGTLAGEATAPKTTRRTGIGVGYSVTSGDTATVYVLRKGRSESEYRLTAFVL*