NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold IrcVar142_1001666

Scaffold IrcVar142_1001666


Overview

Basic Information
Taxon OID3300003251 Open in IMG/M
Scaffold IDIrcVar142_1001666 Open in IMG/M
Source Dataset NameIrcinia variabilis associated microbial communities from Achziv, Israel - Sample 142
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8179
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Ircinia Variabilis Associated → Ircinia Variabilis Associated Microbial Communities From Achziv, Israel

Source Dataset Sampling Location
Location NameAchziv, Israel
CoordinatesLat. (o)33.01Long. (o)35.04Alt. (m)Depth (m)5 to 9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030805Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
IrcVar142_100166613F030805N/AMEKKIVGAAGTLLLGVSAWLISTVYSIQVDTAIIKDKIEKVYEDNCPYCVHAAHSSIANHPLLGPTIKHSHQHIGREIVKTND*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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