Scaffold JGI26116J46587_1000176

Overview

Basic Information

• Taxon OID: 3300003247
• Scaffold ID: JGI26116J46587_1000176
• Source Dataset Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_03_M0_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11045
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F016596	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26116J46587_100017614	F014804	GAG	MNEEWLDNILDGEPSGITDTQWLIIENNICNTSLPSRTIEDILERLNHLTQLEAEEIITTINENTHERDTRKQWERMFKEGMFEHRDL*
JGI26116J46587_100017615	F016596	GGA	LINTFTKMTNQYSLDKIRKSRNEFEALLRIYGVSNTLLSKVMVVNYATSKKFLADPTRVRFIHAKRLADYLGLQMQDIVDTIVYDLK*
JGI26116J46587_100017618	F009300	N/A	MIKWKNTTYPSTFIRLSDELAKVRSMLSADVYNPDTEKYRGDQEHQIQSLGIFAELVARHLMENNKGIRYKAAPIIESRPVVEADIVIEGIDEYNYVDVKGIKSAGNALRVNFKAHNNPKKKITHYLFIQPLNGLYARFCWFTHEQVSKWTVVMSTYTECYELEIQKHN*