Scaffold Ga0051080_1012386

Overview

Basic Information

• Taxon OID: 3300003146
• Scaffold ID: Ga0051080_1012386
• Source Dataset Name: Human fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8499
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Source Dataset Sampling Location

• Location Name: Washington University at St. Louis, Missouri, USA
• Coordinates
  • Lat. (^o): 38.63549
  • Long. (^o): -90.264891

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076189	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0051080_101238610	F076189	N/A	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL*