NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0051080_1006576

Scaffold Ga0051080_1006576


Overview

Basic Information
Taxon OID3300003146 Open in IMG/M
Scaffold IDGa0051080_1006576 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Washington University at St. Louis, Missouri, USA, of twins - TS28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterWashington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13811
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Huma Fecal → Human Fecal Microbial Communities From Washington University At St. Louis, Missouri, Usa, Of Twins

Source Dataset Sampling Location
Location NameWashington University at St. Louis, Missouri, USA
CoordinatesLat. (o)38.63549Long. (o)-90.264891Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068855Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0051080_100657616F068855N/AVPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYHGSDLHYHVNVSAALSEGGTVW*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.