Scaffold Ga0052246_1001875

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052246_1001875

Scaffold Ga0052246_1001875

Overview

Basic Information
Taxon OID	3300003141 Open in IMG/M
Scaffold ID	Ga0052246_1001875 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Japan Agency for Marine-Earth Science and Technology
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1405
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Source Dataset Sampling Location
Location Name	Shimokita Peninsula, Japan, in Northwestern Pacific
Coordinates	Lat. (^o)	41.1773	Long. (^o)	142.2013	Alt. (m)		Depth (m)	1180.5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058676	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052246_10018754	F058676	AGGAGG	VKERIIRMELTDLEKILREQGTIKKNEHLNDAHIEPGELVIRVLAEDK

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