Scaffold Ga0052239_109266

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052239_109266

Scaffold Ga0052239_109266

Overview

Basic Information
Taxon OID	3300003099 Open in IMG/M
Scaffold ID	Ga0052239_109266 Open in IMG/M
Source Dataset Name	Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1411
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Source Dataset Sampling Location
Location Name	Lake Needwood, Maryland, USA
Coordinates	Lat. (^o)	39.121	Long. (^o)	-77.129	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082341	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052239_1092662	F082341	AGGAG	MASVMAGDREAAGAIAGMQDVYGRPLPDRGQAIRGVTGGKRWSGMCAHSDQIRVIVEIEPDVFLTVSPADIEID*

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