Scaffold Ga0052239_104636

Overview

Basic Information

• Taxon OID: 3300003099
• Scaffold ID: Ga0052239_104636
• Source Dataset Name: Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2929
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Source Dataset Sampling Location

• Location Name: Lake Needwood, Maryland, USA
• Coordinates
  • Lat. (^o): 39.121
  • Long. (^o): -77.129

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F011484	Metagenome	290	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052239_1046365	F018135	AGG	MTVERVRHSGAYVISEIVGEGARGYLFTQTYYGYTLKQAKAQFKIALKEAN*
Ga0052239_1046366	F011484	AGGAGG	MQELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLNLPQIMRERAS*
Ga0052239_1046368	F003212	GGAGG	MQDRYLVTLEIETYDGDPRAWDWSTLLGYEDKVKVIETQFKGRVLPEEGEGNE*
Ga0052239_1046369	F000821	GGAG	MNREYLEAKFDLCINQAEIDLQQEEIARAIANLRRANSALTQLFGFEEEDQ*