Scaffold Ga0052239_103072

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0052239_103072

Scaffold Ga0052239_103072

Overview

Basic Information
Taxon OID	3300003099 Open in IMG/M
Scaffold ID	Ga0052239_103072 Open in IMG/M
Source Dataset Name	Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	531
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Source Dataset Sampling Location
Location Name	Lake Needwood, Maryland, USA
Coordinates	Lat. (^o)	39.121	Long. (^o)	-77.129	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048273	Metagenome	148	N
F093778	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052239_1030721	F048273	GGAG	MTPRQIDGLIERLDSHSQKLDEVRSDVDRIKGGLVVIGALLFSVLIPLLASLLSK*
Ga0052239_1030722	F093778	AGGA	MDAELQALDAAMAAAAVHGWQIILLDQIEGVWTAIASDKIDGDPLLTGTGATRTDALLALTAALESR*

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