Scaffold Ga0052239

Basic Information
Taxon OID	3300003099 Open in IMG/M
Scaffold ID	Ga0052239_100419 Open in IMG/M
Source Dataset Name	Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300003099 Open in IMG/M

Scaffold ID

Ga0052239_100419 Open in IMG/M

Source Dataset Name

Fresh water viral communities from Lake Needwood, Maryland, USA - June 2007

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2410
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2410

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Fresh Water → Fresh Water Viral Communities From Lake Needwood, Md

Source Dataset Sampling Location
Location Name	Lake Needwood, Maryland, USA
Coordinates	Lat. (^o)	39.121	Long. (^o)	-77.129	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Needwood, Maryland, USA

Coordinates

Lat. (^o)

39.121

Long. (^o)

-77.129

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052239_1004192	F018171	GGA	MALYDAAGNLVVTGYVAPDVESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTLNFIPSGASTANALLAASLPDVNGTCVITGAPIIEIGGYPDAINAATGNRWIYAGGGSIKTTQTGKATGTITLKRYTNLTASGAATNL*
Ga0052239_1004193	F006107	N/A	MNGVAPRAEKALVDYLASGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTAARPIQRTDLTCEVDIEIELQLSADDTDEADVLTTVAALDSLILPLFDENGASVLDAGISSESGPFTAQFATPSDFGASSISNRSRTFTRSITLFCSATL*
Ga0052239_1004195	F005024	N/A	MRPVVNMTVDTSRFDAAMKAYLLQTSRDLHKAVNSRFFFLMVRLFVLVPPKSPQAERTRIGDYLSKPLGDINRISKKTGKRIGKSRLLRRVHLIAQARERKAGRRGLYGVEMKQAASRVYRKAIGSVGYLRSGVVKAIRIFNRGFSQFKAPKWKPLVKPPGYKPPAKPNSALVALANQYGLPEENVAVHKGTKARGFQAVPGWNPTASVVMSTGIADNXSAESSASCRAPCRRPTTTSLRN*
Ga0052239_1004196	F009398	N/A	QPDPCFGRLLHLLMTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAITDANTPVAGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDSGFVLLENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLDLGAKTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0052239_100419

Overview

Ecosystem & Geography

Associated Families

Sequences