Scaffold Ga0051076_101221

Overview

Basic Information

• Taxon OID: 3300003091
• Scaffold ID: Ga0051076_101221
• Source Dataset Name: Hot spring microbial communities from Five Geothermal Springs in Yellowstone National Park, USA - Norris Geyser Basin, Beowulf Spring
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2477
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Five Geothermal Springs In Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: Norris Geyser Basin, Beowulf Spring, Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.711361

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006070	Metagenome / Metatranscriptome	382	N
F011233	Metagenome / Metatranscriptome	293	N
F027904	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0051076_1012212	F027904	GGTGG	MEKYEPPEYDLFNLNNGGTAIGTTPAPLLYEGQANAAVIVPPDLTLRVKQVVIQNATASLITVQLLAVSTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKSGYSLAAVSSVANSANVFVKAYFVKGTGSPI*
Ga0051076_1012214	F011233	AGGAG	LAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEVVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSTSTVPTSSSFVAEEVVSAKLPVKVT*
Ga0051076_1012215	F006070	AGG	MTLYPYLVVDLPITDTNTHTYRTNPFNPLTPTQPGISLVRLGESVPPIRAFNIYVYNYANAALSVQVIANENAKNYQYGAFLDGLDYQSESGYPDFNVGSPFTVPAGSTSAPSVEAIQSDFYTSAAERYLSLALTYSTAPSAGFVRAHIDLFYGGV*