Scaffold Ga0051126_10172

Overview

Basic Information

• Taxon OID: 3300003075
• Scaffold ID: Ga0051126_10172
• Source Dataset Name: Coral viral communities from Mount Irvine Bay, Buccoo, Tobago - healthy corals
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 653
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella → Tistrella mobilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Cnidaria → Unclassified → Unclassified → Unclassified → Coral → Coral Viral Communities From Mount Irvine Bay, Buccoo, Tobago, From Healthy And Bleached Corals

Source Dataset Sampling Location

• Location Name: Mount Irvine Bay, Buccoo, Tobago
• Coordinates
  • Lat. (^o): 11.183496
  • Long. (^o): -60.816715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008031	Metagenome / Metatranscriptome	340	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0051126_101721	F008031	AGGAGG	MASYTAEKGAILQPGNQINRLSSYNTEGVYGWPGFELYEMVGYVKVDNLSADKADNKSFNLTVPSPDRRSSDRVRDDRTSLVVQADADRPAYIYSASIAIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPYGVPATQANGLAAATAITTAFSSGTIAQGCAACI*