Scaffold Ga0052263_10086

Overview

Basic Information

• Taxon OID: 3300003073
• Scaffold ID: Ga0052263_10086
• Source Dataset Name: Marine surface microbial communities Puget Sound, Washington, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Washington
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2646
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Surface Seawater At Puget Sound

Source Dataset Sampling Location

• Location Name: Beach at Golden Gardens Park, Seattle, WA, USA
• Coordinates
  • Lat. (^o): 47.6906558
  • Long. (^o): -122.404411
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y
F103296	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0052263_100861	F008747	AGGA	VTSVGVPLMVPVEESIANPAGRDGEIDQEVTGPPLVVGVTVVMAVPFVSVNELGL*
Ga0052263_1008610	F032291	N/A	VEESKIKPVGSVGEADQEVTVPPVIDGVTVVMAVPFVNVNEFGLYAKEDGVTSLTT
Ga0052263_100862	F008747	N/A	MAPVDESKDKPTGSVGETDHEVIVPPLEVGVAVVIVVPFVNENED*
Ga0052263_100863	F103296	N/A	MVRTAVSLPPVFSAVTVYEADEVTAVGVPLIAPVDESKDNPAGSEGETDQDVMVPPLADGVVVVIAVPFVRVKLFGL*
Ga0052263_100866	F103296	AGGAG	MSFTTMVTVAVSLPPVLLAVMVYKVDEVTAVGVPEIAPVVESKAKPAGRVGETDHEVIVPPLTVGVTVVMPVPFVSVTSSGCKQAMMERHR*
Ga0052263_100867	F032291	AGGA	VIAVGVPDIAPVEASKDSPAGSDGDTDQEVIVPPFTVGVTVVIAVPLVSVNELGLYVSEDGATSLTTMVTVTESLPPVLLPVTV*
Ga0052263_100868	F008747	AGGA	VTVVGVPLMAPVDESNAKPAGSDGETDHDVIVPPLEVGVAVVMVVPFVKENEL*