3300003073: Marine surface microbial communities Puget Sound, Washington, USA

Overview

Basic Information

• IMG/M Taxon OID: 3300003073
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111473 | Gp0097851 | Ga0052263
• Sample Name: Marine surface microbial communities Puget Sound, Washington, USA
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Washington
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2059964
• Sequencing Scaffolds: 3
• Novel Protein Genes: 12
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Surface Seawater At Puget Sound
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Surface Seawater At Puget Sound

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Beach at Golden Gardens Park, Seattle, WA, USA
• Coordinates
  • Lat. (^o): 47.6906558
  • Long. (^o): -122.404411
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y
F103296	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0052263_10085	All Organisms → cellular organisms → Archaea	592
Ga0052263_10086	All Organisms → cellular organisms → Archaea	2646
Ga0052263_10087	All Organisms → cellular organisms → Archaea	975

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052263_10085	Ga0052263_100852	F032291	VTAVGVPLIAPVEASKDKPAGSDGEIDQLVIVPPFTVGVAVVMAVPLVKLNVLGLYVRDEGATSFTTIVTVTVSLPPVL
Ga0052263_10086	Ga0052263_100861	F008747	VTSVGVPLMVPVEESIANPAGRDGEIDQEVTGPPLVVGVTVVMAVPFVSVNELGL*
Ga0052263_10086	Ga0052263_1008610	F032291	VEESKIKPVGSVGEADQEVTVPPVIDGVTVVMAVPFVNVNEFGLYAKEDGVTSLTT
Ga0052263_10086	Ga0052263_100862	F008747	MAPVDESKDKPTGSVGETDHEVIVPPLEVGVAVVIVVPFVNENED*
Ga0052263_10086	Ga0052263_100863	F103296	MVRTAVSLPPVFSAVTVYEADEVTAVGVPLIAPVDESKDNPAGSEGETDQDVMVPPLADGVVVVIAVPFVRVKLFGL*
Ga0052263_10086	Ga0052263_100866	F103296	MSFTTMVTVAVSLPPVLLAVMVYKVDEVTAVGVPEIAPVVESKAKPAGRVGETDHEVIVPPLTVGVTVVMPVPFVSVTSSGCKQAMMERHR*
Ga0052263_10086	Ga0052263_100867	F032291	VIAVGVPDIAPVEASKDSPAGSDGDTDQEVIVPPFTVGVTVVIAVPLVSVNELGLYVSEDGATSLTTMVTVTESLPPVLLPVTV*
Ga0052263_10086	Ga0052263_100868	F008747	VTVVGVPLMAPVDESNAKPAGSDGETDHDVIVPPLEVGVAVVMVVPFVKENEL*
Ga0052263_10087	Ga0052263_100871	F008747	LQRKSPLFGVPLIAPVDESKDKPAGREGETDHDVMVPPLTVGVAVVIAVP
Ga0052263_10087	Ga0052263_100872	F032291	VTAVGVPLIAPVVESKDNPAGSDAETVQEVIGPPLTVGVAVVIEVPFVNVNELGLYERPDGATSLTTIVTVAVSLPPVLPAVTV*
Ga0052263_10087	Ga0052263_100873	F008747	VTAVGVPLIAPVVESKDKPAGSVGETDHDVIVPPFAVGVIVVIAVPLVSEKEL*
Ga0052263_10087	Ga0052263_100874	F103296	LLAVIVYVAEEVTADGVPPMAPVEASKDKPAGSDGNTDQEVIVPPFTVGVTVVIAVSFVSVNELGL*