Scaffold Ga0051127_10594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0051127_10594

Scaffold Ga0051127_10594

Overview

Basic Information
Taxon OID	3300003069 Open in IMG/M
Scaffold ID	Ga0051127_10594 Open in IMG/M
Source Dataset Name	Coral viral communities from Mount Irvine Bay, Buccoo, Tobago - bleached corals
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	659
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Cnidaria → Unclassified → Unclassified → Unclassified → Coral → Coral Viral Communities From Mount Irvine Bay, Buccoo, Tobago, From Healthy And Bleached Corals

Source Dataset Sampling Location
Location Name	Mount Irvine Bay, Buccoo, Tobago
Coordinates	Lat. (^o)	11.183496	Long. (^o)	-60.816715	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043885	Metagenome	155	Y
F058923	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0051127_105941	F058923	GAG	MSITFVYRDENNKVQVKKIEYEEVKKDLMKYLSHDIRSIIKEKEEDEHNI*
Ga0051127_105942	F043885	AGGAG	MNIIYKSGNYVSAPMTESLFWSRVGWLRNAMLTAENFEFRLLYFHKLQELMRFVP*

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