NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0051127_10538

Scaffold Ga0051127_10538


Overview

Basic Information
Taxon OID3300003069 Open in IMG/M
Scaffold IDGa0051127_10538 Open in IMG/M
Source Dataset NameCoral viral communities from Mount Irvine Bay, Buccoo, Tobago - bleached corals
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Cnidaria → Unclassified → Unclassified → Unclassified → Coral → Coral Viral Communities From Mount Irvine Bay, Buccoo, Tobago, From Healthy And Bleached Corals

Source Dataset Sampling Location
Location NameMount Irvine Bay, Buccoo, Tobago
CoordinatesLat. (o)11.183496Long. (o)-60.816715Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027171Metagenome / Metatranscriptome195N
F088830Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0051127_105381F088830N/ASWYYAVLASKAVLQQKIAELEGDSFFSPAFYIDKLEGLEDLEMFLKMSWDEWLASLATDQTAVEESK*
Ga0051127_105382F027171GGAGGVSQVLEIDSLDFDHDGLLHVTALVDEVVLVRKQTIFDPPEYGAALYRGSFYLSDEDLIPATDALLRKLIADRVDDWAPIDPDE*

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