Scaffold JGI24143J45723_1023039

Overview

Basic Information

• Taxon OID: 3300002989
• Scaffold ID: JGI24143J45723_1023039
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-32A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1555
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.28381
  • Long. (^o): -156.5985

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029738	Metagenome	187	Y
F087142	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24143J45723_10230392	F029738	N/A	MSQYKNDPRMITAKFSSNCSKCKAKLLKGTSIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAC*
JGI24143J45723_10230393	F087142	N/A	MACQLPTQVPRAWANQMTEFQFLENLEFYQRRFEKHHHKFIRDLNLYIRNNRVHDSVFFKTVLNYSLNITLSASWIKLLKDFNSDKYNNILRFSPDFNNLNGVPDVKINPTGSGINE*