Sample 3300002989

Overview

Basic Information
IMG/M Taxon OID	3300002989 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0084162 \| Gp0055556 \| Ga0004689
Sample Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-32A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	230462575
Sequencing Scaffolds	18
Novel Protein Genes	21
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rifamycini	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Hypholoma → Hypholoma sublateritium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Alaska
Coordinates	Lat. (^o)	71.28381	Long. (^o)	-156.5985	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F025269	Metagenome / Metatranscriptome	202	Y
F029737	Metagenome	187	Y
F029738	Metagenome	187	Y
F048266	Metagenome	148	N
F063150	Metagenome	130	Y
F067243	Metagenome	126	N
F080207	Metagenome	115	Y
F084901	Metagenome	112	N
F086912	Metagenome	110	N
F087142	Metagenome	110	N
F088756	Metagenome	109	N
F088781	Metagenome	109	Y
F088782	Metagenome	109	N
F092168	Metagenome	107	N
F099181	Metagenome / Metatranscriptome	103	Y
F104110	Metagenome / Metatranscriptome	101	N

Family

Category

Number of Sequences

3D Structure?

F025269

Metagenome / Metatranscriptome

202

F029737

Metagenome

187

F029738

Metagenome

187

F048266

Metagenome

148

F063150

Metagenome

130

F067243

Metagenome

126

F080207

Metagenome

115

F084901

Metagenome

112

F086912

Metagenome

110

F087142

Metagenome

110

F088756

Metagenome

109

F088781

Metagenome

109

F088782

Metagenome

109

F092168

Metagenome

107

F099181

Metagenome / Metatranscriptome

103

F104110

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
JGI24143J45723_1000195	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	32713	Open in IMG/M
JGI24143J45723_1001005	All Organisms → cellular organisms → Bacteria	14003	Open in IMG/M
JGI24143J45723_1002096	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8928	Open in IMG/M
JGI24143J45723_1002163	All Organisms → cellular organisms → Bacteria	8785	Open in IMG/M
JGI24143J45723_1005312	All Organisms → cellular organisms → Bacteria	4727	Open in IMG/M
JGI24143J45723_1016740	Not Available	2024	Open in IMG/M
JGI24143J45723_1019615	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
JGI24143J45723_1023039	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	1555	Open in IMG/M
JGI24143J45723_1026051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	1404	Open in IMG/M
JGI24143J45723_1032731	Not Available	1158	Open in IMG/M
JGI24143J45723_1038792	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
JGI24143J45723_1053157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	786	Open in IMG/M
JGI24143J45723_1055928	Not Available	757	Open in IMG/M
JGI24143J45723_1061582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rifamycini	704	Open in IMG/M
JGI24143J45723_1073641	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Hypholoma → Hypholoma sublateritium	620	Open in IMG/M
JGI24143J45723_1076714	Not Available	603	Open in IMG/M
JGI24143J45723_1082028	Not Available	576	Open in IMG/M
JGI24143J45723_1094295	Not Available	523	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI24143J45723_1000195

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales

32713

Open in IMG/M

JGI24143J45723_1001005

All Organisms → cellular organisms → Bacteria

14003

Open in IMG/M

JGI24143J45723_1002096

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

8928

Open in IMG/M

JGI24143J45723_1002163

All Organisms → cellular organisms → Bacteria

8785

Open in IMG/M

JGI24143J45723_1005312

All Organisms → cellular organisms → Bacteria

4727

Open in IMG/M

JGI24143J45723_1016740

Not Available

2024

Open in IMG/M

JGI24143J45723_1019615

All Organisms → cellular organisms → Bacteria

1784

Open in IMG/M

JGI24143J45723_1023039

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae

1555

Open in IMG/M

JGI24143J45723_1026051

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae

1404

Open in IMG/M

JGI24143J45723_1032731

Not Available

1158

Open in IMG/M

JGI24143J45723_1038792

All Organisms → cellular organisms → Bacteria

1006

Open in IMG/M

JGI24143J45723_1053157

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae

786

Open in IMG/M

JGI24143J45723_1055928

Not Available

757

Open in IMG/M

JGI24143J45723_1061582

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rifamycini

704

Open in IMG/M

JGI24143J45723_1073641

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Strophariaceae → Hypholoma → Hypholoma sublateritium

620

Open in IMG/M

JGI24143J45723_1076714

Not Available

603

Open in IMG/M

JGI24143J45723_1082028

Not Available

576

Open in IMG/M

JGI24143J45723_1094295

Not Available

523

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI24143J45723_1000195	JGI24143J45723_10001954	F084901	METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSXTNKMAEEL*
JGI24143J45723_1001005	JGI24143J45723_10010057	F086912	MIEEFIQNLRQVEVEAKGVIKVARERVQTIQSEAESSLAAVRASVELSLQQRLDAIDRETNXHMKLAEDQLRRDLKEQLETLEHRAQDRKPVALDLLLSRLTAR*
JGI24143J45723_1001485	JGI24143J45723_10014858	F104110	MYLGKDVTTEDDMELGKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNXRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24143J45723_1002096	JGI24143J45723_10020963	F029738	MSQYKNDPRMITAKFSSSCSXCKTKLLKGTSXYYWXSSREVFCTKCGEGPXRQFLSSAADEDVYNGCGNPYAY*
JGI24143J45723_1002163	JGI24143J45723_10021633	F029738	MTRYSNDPRQITAKFSSSCSKCKTKIKKGAIIYYWPSSHEVFCTSCGDARYRQFLSNAADEDVYNGTGNPYAW*
JGI24143J45723_1005312	JGI24143J45723_10053125	F048266	MRRLMTVMAFAGGLLGLGNYVWDGWTMASGGRNLYVPSNIVSVLLLVIAGSVAATMLLRDHGRMIEEERKEYRATLAISVAALAILSSWILFRAARTA*
JGI24143J45723_1016740	JGI24143J45723_10167402	F067243	MTDARTDSPQGQAWSGPMRATAKQSLRYRLTTSGLVLTLVDPHGSGLWRLSRPTDGLELLTLAGAGPELLRCGYIIDRRGVETAVXLGHRQNGHLPEEVRFTTRRIRWRQELTVDPVLVVGDLWVAEAIGAFDVVSVEGRDSTSTTGLDGQFRHVF*
JGI24143J45723_1019615	JGI24143J45723_10196152	F025269	MAKVPAFYSINEVKKPVDNRVHHDDNTCPPGRDIPANERKIGTGNYRLCAICAARK*
JGI24143J45723_1023039	JGI24143J45723_10230392	F029738	MSQYKNDPRMITAKFSSNCSKCKAKLLKGTSIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAC*
JGI24143J45723_1023039	JGI24143J45723_10230393	F087142	MACQLPTQVPRAWANQMTEFQFLENLEFYQRRFEKHHHKFIRDLNLYIRNNRVHDSVFFKTVLNYSLNITLSASWIKLLKDFNSDKYNNILRFSPDFNNLNGVPDVKINPTGSGINE*
JGI24143J45723_1026051	JGI24143J45723_10260513	F029737	QMTEIQFLEELEASQKSFEKLNYIFIRDMHKYIRKSTVYDSTFFKTILNYSVNITLTAEWIKLLKDFNSDKYNNILRFSPDFNHSTGAPDAIKKSVRQQHQR*
JGI24143J45723_1032731	JGI24143J45723_10327311	F088756	FPTAAVVSAVCADLGWPLLESTIAYRFGPHSYTTWVGTFLPDEQSGMGCTRIALAETSYRFELGSLAAALTLTRAIAETCGPQVLAFTSGGAHVVVGADTTLADVKAAFALAHETALVL*
JGI24143J45723_1038792	JGI24143J45723_10387922	F029738	MSRYSNDPRQISAKFSSNCSKCKVKITKGTIIYYWPSSREVYCISCGDAPYRQFLSSVADEEVYSGNGNPYAY*
JGI24143J45723_1040665	JGI24143J45723_10406651	F104110	SSVGEVYYLVEKGKDSYTRYYFTQEDVLASNERVVTRSVREFTDDIAKRSHFLCALYGVEVRDTTNNRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24143J45723_1053157	JGI24143J45723_10531572	F087142	MTEFQFLENLEFYQRRFEKLHQRIVGDMSLYIRKNHVHDSVFFKTILQFSVNITLTAAWIKLLKDFNADKYSKVLRFSPEFNSINGVPGAKINPSGNGNNK*
JGI24143J45723_1055928	JGI24143J45723_10559282	F088781	MTVTDSPQASLMLAARVLHVAADLAEADTRNGLTGYVTETGVKSLLWLCDSLLPTDLDLADSTDRGRPVRMLLQEAESELRRFPIGAYPAGTVNVVLGLCDLIRRTAGTPT*
JGI24143J45723_1061582	JGI24143J45723_10615821	F088782	MSWLDLPPLELIGAAPDPVVTPXENGLVKGXLGLVAGGLVGFWTTSTVEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLLDREKKVLRVRNRNPRSGPPRVFPGRTTGVTNPDLDPRAVWQLSHMVDVALRRDERWALAPGGHGSSDYFLGLETGPWQGQRRLIVTAQPAVIARQWAGARLGIAK
JGI24143J45723_1073641	JGI24143J45723_10736411	F063150	MRLILGITIFLFTTPVAWAVSYPQHAPAAGLEEFTSVEAIKFRDAQGTSTPPSIPKSWKLISVSTGEKSNSNNLWFQDSDGSIYLLQGFTSQNKFFIHENAYKIPAK*
JGI24143J45723_1076714	JGI24143J45723_10767141	F092168	RVVNGRLLVPFALLVVAAVVVTLAIGGAGRGALNPVSLQTPTSSPTVYQPVDVASESMFTPAPPADDVEALPLIVSLAESVPRTPDGILSFRVSVCVNGTVGSAAGGRVPILRNFWTLVSRSTNELLAPMDSGPQPVFPSEWYYLKGQCASGYISFQTSSGFVPQFLAYQDNRFQWSWRVA*
JGI24143J45723_1082028	JGI24143J45723_10820281	F099181	KNPEKNRKVLQVMDMHSMMKGSGEAMAALAKNMPGKEKADAEKKKPNEMDNFVKTGKTKQVFGYTAEEYSKEITKEENGKVHSGTMSVWYAKVDFDPEMMFSLGMGNLAGGQSQSKMHPNNMIGLGMTQKNYLMVEMDYAEKGGKSGTGMKVVGIEKTNFSKSTEGYYVKNYAGMSMKEMMQKENEER*
JGI24143J45723_1094295	JGI24143J45723_10942951	F080207	MRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEAQLDWIHSYGY

Scaffold ID

Protein ID

Family

Sequence

JGI24143J45723_1000195

JGI24143J45723_10001954

F084901

METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSXTNKMAEEL*

JGI24143J45723_1001005

JGI24143J45723_10010057

F086912

MIEEFIQNLRQVEVEAKGVIKVARERVQTIQSEAESSLAAVRASVELSLQQRLDAIDRETNXHMKLAEDQLRRDLKEQLETLEHRAQDRKPVALDLLLSRLTAR*

JGI24143J45723_1001485

JGI24143J45723_10014858

F104110

MYLGKDVTTEDDMELGKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNXRVVTRSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*

JGI24143J45723_1002096

JGI24143J45723_10020963

F029738

MSQYKNDPRMITAKFSSSCSXCKTKLLKGTSXYYWXSSREVFCTKCGEGPXRQFLSSAADEDVYNGCGNPYAY*

JGI24143J45723_1002163

JGI24143J45723_10021633

F029738

MTRYSNDPRQITAKFSSSCSKCKTKIKKGAIIYYWPSSHEVFCTSCGDARYRQFLSNAADEDVYNGTGNPYAW*

JGI24143J45723_1005312

JGI24143J45723_10053125

F048266

MRRLMTVMAFAGGLLGLGNYVWDGWTMASGGRNLYVPSNIVSVLLLVIAGSVAATMLLRDHGRMIEEERKEYRATLAISVAALAILSSWILFRAARTA*

JGI24143J45723_1016740

JGI24143J45723_10167402

F067243

MTDARTDSPQGQAWSGPMRATAKQSLRYRLTTSGLVLTLVDPHGSGLWRLSRPTDGLELLTLAGAGPELLRCGYIIDRRGVETAVXLGHRQNGHLPEEVRFTTRRIRWRQELTVDPVLVVGDLWVAEAIGAFDVVSVEGRDSTSTTGLDGQFRHVF*

JGI24143J45723_1019615

JGI24143J45723_10196152

F025269

MAKVPAFYSINEVKKPVDNRVHHDDNTCPPGRDIPANERKIGTGNYRLCAICAARK*

JGI24143J45723_1023039

JGI24143J45723_10230392

F029738

MSQYKNDPRMITAKFSSNCSKCKAKLLKGTSIYYWPSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAC*

JGI24143J45723_1023039

JGI24143J45723_10230393

F087142

MACQLPTQVPRAWANQMTEFQFLENLEFYQRRFEKHHHKFIRDLNLYIRNNRVHDSVFFKTVLNYSLNITLSASWIKLLKDFNSDKYNNILRFSPDFNNLNGVPDVKINPTGSGINE*

JGI24143J45723_1026051

JGI24143J45723_10260513

F029737

QMTEIQFLEELEASQKSFEKLNYIFIRDMHKYIRKSTVYDSTFFKTILNYSVNITLTAEWIKLLKDFNSDKYNNILRFSPDFNHSTGAPDAIKKSVRQQHQR*

JGI24143J45723_1032731

JGI24143J45723_10327311

F088756

FPTAAVVSAVCADLGWPLLESTIAYRFGPHSYTTWVGTFLPDEQSGMGCTRIALAETSYRFELGSLAAALTLTRAIAETCGPQVLAFTSGGAHVVVGADTTLADVKAAFALAHETALVL*

JGI24143J45723_1038792

JGI24143J45723_10387922

F029738

MSRYSNDPRQISAKFSSNCSKCKVKITKGTIIYYWPSSREVYCISCGDAPYRQFLSSVADEEVYSGNGNPYAY*

JGI24143J45723_1040665

JGI24143J45723_10406651

F104110

SSVGEVYYLVEKGKDSYTRYYFTQEDVLASNERVVTRSVREFTDDIAKRSHFLCALYGVEVRDTTNNRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*

JGI24143J45723_1053157

JGI24143J45723_10531572

F087142

MTEFQFLENLEFYQRRFEKLHQRIVGDMSLYIRKNHVHDSVFFKTILQFSVNITLTAAWIKLLKDFNADKYSKVLRFSPEFNSINGVPGAKINPSGNGNNK*

JGI24143J45723_1055928

JGI24143J45723_10559282

F088781

MTVTDSPQASLMLAARVLHVAADLAEADTRNGLTGYVTETGVKSLLWLCDSLLPTDLDLADSTDRGRPVRMLLQEAESELRRFPIGAYPAGTVNVVLGLCDLIRRTAGTPT*

JGI24143J45723_1061582

JGI24143J45723_10615821

F088782

MSWLDLPPLELIGAAPDPVVTPXENGLVKGXLGLVAGGLVGFWTTSTVEIWHPDNPAALAAILGVGEVERMDTGTGFAECGLLDREKKVLRVRNRNPRSGPPRVFPGRTTGVTNPDLDPRAVWQLSHMVDVALRRDERWALAPGGHGSSDYFLGLETGPWQGQRRLIVTAQPAVIARQWAGARLGIAK

JGI24143J45723_1073641

JGI24143J45723_10736411

F063150

MRLILGITIFLFTTPVAWAVSYPQHAPAAGLEEFTSVEAIKFRDAQGTSTPPSIPKSWKLISVSTGEKSNSNNLWFQDSDGSIYLLQGFTSQNKFFIHENAYKIPAK*

JGI24143J45723_1076714

JGI24143J45723_10767141

F092168

RVVNGRLLVPFALLVVAAVVVTLAIGGAGRGALNPVSLQTPTSSPTVYQPVDVASESMFTPAPPADDVEALPLIVSLAESVPRTPDGILSFRVSVCVNGTVGSAAGGRVPILRNFWTLVSRSTNELLAPMDSGPQPVFPSEWYYLKGQCASGYISFQTSSGFVPQFLAYQDNRFQWSWRVA*

JGI24143J45723_1082028

JGI24143J45723_10820281

F099181

KNPEKNRKVLQVMDMHSMMKGSGEAMAALAKNMPGKEKADAEKKKPNEMDNFVKTGKTKQVFGYTAEEYSKEITKEENGKVHSGTMSVWYAKVDFDPEMMFSLGMGNLAGGQSQSKMHPNNMIGLGMTQKNYLMVEMDYAEKGGKSGTGMKVVGIEKTNFSKSTEGYYVKNYAGMSMKEMMQKENEER*

JGI24143J45723_1094295

JGI24143J45723_10942951

F080207

MRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEAQLDWIHSYGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002989: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-32A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences