Scaffold G310J44882_10016123

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10016123
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2033
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029327	Metagenome	188	Y
F037029	Metagenome	168	Y
F056283	Metagenome / Metatranscriptome	137	Y
F074332	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_100161232	F056283	AGGAG	MFETLVDQLVKVTLTPEPVKTEFYNGTLFVSKITERQARSIFHVLSQTLGMGTVQVSPIGVTGEYAFDFVAEKQHQNTEDFSPFATVNS*
G310J44882_100161233	F074332	AGGAG	MAYDHLAKLDVEGLQGYFSDFHKDFYGSRPRWGTPEQWIDRAWLESNIINIHTAMDRMKETVEGREELRANGWVIDEADYDDVIDPKEYAEWSADADARAYGEMI*
G310J44882_100161234	F029327	GGAG	MGSFKHIEIEIMHWQACGRTVEETYIYWKDYVTHEDVVRIFSQETV*
G310J44882_100161236	F037029	N/A	MWCQEKWFEHKDELESYSQPLLYTADQYFARYKFWLRREYRYQQNG*