Scaffold G310J44882_10006414

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10006414
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3904
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054520	Metagenome	139	N
F070807	Metagenome	122	N
F090055	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_100064144	F090055	N/A	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
G310J44882_100064147	F054520	AGGGGG	VLEKTIIAATGLGYLMVGILQLRKGAFPNAIIWLGYAFSQIGLWLALK*
G310J44882_100064149	F070807	N/A	FFGATLMEILIKKIKENKDGSAEVHVHYDKEGLHFLVQQGMTATLVEAIMMERNGEMFHVSSVLDTIPKKTVVKKQQTKKK*