Metagenome Family F090055

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090055
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	52 residues
Representative Sequence	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Number of Associated Samples	78
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	40.00 %
% of genes near scaffold ends (potentially truncated)	9.26 %
% of genes from short scaffolds (< 2000 bps)	11.11 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (87.963 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (75.000 % of family members)
Environment Ontology (ENVO)	Unclassified (94.444 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (89.815 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 79.63% β-sheet: 0.00% Coil/Unstructured: 20.37%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF16786	RecA_dep_nuc	47.22
PF00145	DNA_methylase	6.48
PF07120	DUF1376	4.63
PF00149	Metallophos	2.78
PF00166	Cpn10	1.85
PF03567	Sulfotransfer_2	1.85
PF15943	YdaS_antitoxin	1.85
PF01555	N6_N4_Mtase	0.93
PF14549	P22_Cro	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	6.48
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	4.63
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	1.85
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.93
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.93
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
All Organisms	root	All Organisms	12.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
cellular organisms	root	All Organisms → cellular organisms	6.48 %
Viruses	superkingdom	All Organisms → Viruses	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.48 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	5.56 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5.56 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	5.56 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5.56 %
Pusillimonas (ex Stolz et al. 2005)	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005)	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5.56 %
unclassified Pusillimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.96 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5.56 %
Pusillimonas sp. (ex Stolz et al. 2005)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001849\|RCM26_1107685	Not Available	932	Open in IMG/M
3300002933\|G310J44882_10006414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3904	Open in IMG/M
3300003783\|Ga0007850_1000072	All Organisms → cellular organisms → Bacteria	10270	Open in IMG/M
3300003796\|Ga0007865_1015561	Not Available	728	Open in IMG/M
3300003798\|Ga0007842_1001558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1975	Open in IMG/M
3300003812\|Ga0007861_1014435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	696	Open in IMG/M
3300004807\|Ga0007809_10207605	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	563	Open in IMG/M
3300004807\|Ga0007809_10211395	Not Available	557	Open in IMG/M
3300006071\|Ga0007876_1153219	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	575	Open in IMG/M
3300006100\|Ga0007806_1096243	Not Available	545	Open in IMG/M
3300006103\|Ga0007813_1097250	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	567	Open in IMG/M
3300009175\|Ga0073936_10134101	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1909	Open in IMG/M
3300013093\|Ga0164296_1024810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3557	Open in IMG/M
3300022555\|Ga0212088_10044635	Not Available	4909	Open in IMG/M
3300022602\|Ga0248169_122891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3676	Open in IMG/M
3300025357\|Ga0208383_1001217	Not Available	4207	Open in IMG/M
3300025385\|Ga0207956_1004012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2713	Open in IMG/M
3300025598\|Ga0208379_1118753	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	618	Open in IMG/M
3300025723\|Ga0208741_10017162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005)	1817	Open in IMG/M
3300032677\|Ga0316227_1034761	Not Available	2287	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	99.07%
Marine	Environmental → Aquatic → Marine	0.93%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	89.81%
Lake	Environmental → Aquatic → Freshwater → Lake	8.33%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.93%
Coastal	Environmental → Aquatic → Marine → Coastal	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	75.00%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	11.11%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	8.33%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.78%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	75.00%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	11.11%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.48%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.78%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.85%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	0.93%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.93%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300001849	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b	Environmental	Open in IMG/M
3300002933	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M
3300003789	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08	Environmental	Open in IMG/M
3300003796	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09	Environmental	Open in IMG/M
3300003797	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07	Environmental	Open in IMG/M
3300003798	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07	Environmental	Open in IMG/M
3300003803	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH13Jun08	Environmental	Open in IMG/M
3300003812	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08	Environmental	Open in IMG/M
3300003815	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07	Environmental	Open in IMG/M
3300004685	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (version 2)	Environmental	Open in IMG/M
3300004770	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07	Environmental	Open in IMG/M
3300004777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M
3300004807	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07	Environmental	Open in IMG/M
3300006071	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09	Environmental	Open in IMG/M
3300006100	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09	Environmental	Open in IMG/M
3300006101	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09	Environmental	Open in IMG/M
3300006103	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09	Environmental	Open in IMG/M
3300006104	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1	Environmental	Open in IMG/M
3300006106	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07	Environmental	Open in IMG/M
3300006107	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Oct07	Environmental	Open in IMG/M
3300006108	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07	Environmental	Open in IMG/M
3300006111	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul08	Environmental	Open in IMG/M
3300006112	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08	Environmental	Open in IMG/M
3300006116	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09	Environmental	Open in IMG/M
3300006118	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07	Environmental	Open in IMG/M
3300006119	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300013093	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG	Environmental	Open in IMG/M
3300013094	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG	Environmental	Open in IMG/M
3300020711	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 hypolimnion	Environmental	Open in IMG/M
3300021133	Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion	Environmental	Open in IMG/M
3300021142	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300022602	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion	Environmental	Open in IMG/M
3300025330	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Jun07 (SPAdes)	Environmental	Open in IMG/M
3300025336	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025339	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025357	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025358	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)	Environmental	Open in IMG/M
3300025369	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE28Sep08 (SPAdes)	Environmental	Open in IMG/M
3300025372	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)	Environmental	Open in IMG/M
3300025382	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025383	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025385	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025387	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025392	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)	Environmental	Open in IMG/M
3300025396	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes)	Environmental	Open in IMG/M
3300025400	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025403	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH23Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025407	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025423	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025429	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (SPAdes)	Environmental	Open in IMG/M
3300025435	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes)	Environmental	Open in IMG/M
3300025437	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH28Sep08 (SPAdes)	Environmental	Open in IMG/M
3300025449	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul08 (SPAdes)	Environmental	Open in IMG/M
3300025450	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025467	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025598	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025723	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025778	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025781	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH16Oct07 (SPAdes)	Environmental	Open in IMG/M
3300025782	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08 (SPAdes)	Environmental	Open in IMG/M
3300025785	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025789	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025838	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300032117	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003	Environmental	Open in IMG/M
3300032560	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009	Environmental	Open in IMG/M
3300032562	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017	Environmental	Open in IMG/M
3300032605	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13	Environmental	Open in IMG/M
3300032675	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18015	Environmental	Open in IMG/M
3300032676	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023	Environmental	Open in IMG/M
3300032677	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18019	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TBL_comb48_EPIDRAFT_10519473	3300000439	Freshwater	MAHRTSQQPINRKINEMNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
RCM26_11076852	3300001849	Marine Plankton	MNDYSDFILKLNSFIKHYHEAVLKNKYQNAYLIACSITETAQELEDWTSKQSVH*
G310J44882_100064144	3300002933	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
JGI26470J50227_10170882	3300003375	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSQAYLIACSITESAQXLEDWTSTKSVH*
JGI26470J50227_10318733	3300003375	Freshwater	SHSMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007850_100007212	3300003783	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007835_10028675	3300003789	Freshwater	RNLAHRTSQQPINRKINEMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQXLEDWTSTKSVH*
Ga0007835_10032401	3300003789	Freshwater	RNLAHRTSQQPINRKINEMNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007835_10066463	3300003789	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQEL
Ga0007865_10155611	3300003796	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWT
Ga0007846_10118461	3300003797	Freshwater	NRKSHSMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0007842_10015584	3300003798	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSITESAQELEDWTSTKSVH*
Ga0007849_10022113	3300003803	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITES
Ga0007849_10106602	3300003803	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELED
Ga0007861_10069611	3300003812	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH*
Ga0007861_10144353	3300003812	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSITESAQNLEDWTSAKSVH*
Ga0007856_10019966	3300003815	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTST
Ga0007856_10054572	3300003815	Freshwater	MNDYADIILKLNSFIXHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0065177_11024191	3300004685	Freshwater	NDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH*
Ga0007804_10481061	3300004770	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQEL
Ga0007804_10714624	3300004770	Freshwater	IKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007804_10927243	3300004770	Freshwater	MNDYANIILKLNSFIKHYHEAVLKGKYSQAYLIACSITES
Ga0007827_101306641	3300004777	Freshwater	RTSQQPINRKINEMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007854_100643661	3300004806	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTS
Ga0007854_100816061	3300004806	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQE
Ga0007809_102076051	3300004807	Freshwater	RHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007809_102113951	3300004807	Freshwater	LNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSKKSVH*
Ga0007876_10245581	3300006071	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSI
Ga0007876_10328614	3300006071	Freshwater	MNDYADIILKLNSFIKHYHDAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH*
Ga0007876_11532193	3300006071	Freshwater	YADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007806_10253471	3300006100	Freshwater	NSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH*
Ga0007806_10962433	3300006100	Freshwater	YHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007810_10530001	3300006101	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDW
Ga0007810_10578661	3300006101	Freshwater	MNDYANIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELE
Ga0007810_10911581	3300006101	Freshwater	IILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007813_10972503	3300006103	Freshwater	HYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007882_102606333	3300006104	Freshwater	RASKQQTTRKSYTMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007833_10111474	3300006106	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSKKSVH*
Ga0007836_10970012	3300006107	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAKELEDWTSTKSVH*
Ga0007862_10415162	3300006108	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSKKSVH*
Ga0007862_10671881	3300006108	Freshwater	ILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007862_11044243	3300006108	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITE
Ga0007848_10086233	3300006111	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH*
Ga0007857_10309204	3300006112	Freshwater	NLAHRTSQQPINRKINEMNDYADIILKLNSFIKHYHEAVLEGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0007807_10455101	3300006116	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSV
Ga0007859_10374104	3300006118	Freshwater	HYHEAVLKGKYSQAYLIACSITESAQELEDWTSKKSVH*
Ga0007866_10996651	3300006119	Freshwater	NDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0075464_108865902	3300006805	Aqueous	MNDYADLILKLNSFIKHYHTAVLSEKYTQAYLIACSITETAQELEDWTSKHRVH*
Ga0073936_101341015	3300009175	Freshwater Lake Hypolimnion	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSLTESAQELEDWTCSKSVH*
Ga0164296_10248108	3300013093	Freshwater	MNDYADIILKLNSFIKNYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0164296_10496324	3300013093	Freshwater	KLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0164296_11569481	3300013093	Freshwater	KHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0164297_100465991	3300013094	Freshwater	SMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0164297_102652111	3300013094	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITE
Ga0164297_103775931	3300013094	Freshwater	SRNLAYRTSQQPINRKINEMNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH*
Ga0214237_10095763	3300020711	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0214175_10396102	3300021133	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQKLEDWTSTKSVH
Ga0214192_10923481	3300021142	Freshwater	NDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0212088_100446356	3300022555	Freshwater Lake Hypolimnion	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSLTESAQELEDWTCSKSVH
Ga0248169_1228915	3300022602	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208615_1034143	3300025330	Freshwater	YHNAVLKGKYSDAYVIACSITESAQNLEDWTSAKSVH
Ga0208619_1029663	3300025336	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSITESAQNLEDWTSAKSVH
Ga0208502_10107794	3300025339	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIAC
Ga0208383_10012178	3300025357	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSITESAQELEDWTSTKSVH
Ga0208504_10140811	3300025358	Freshwater	KINEMNDYADIILKLNSFIKHYHEAVLEGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208382_10079295	3300025369	Freshwater	NLAHRTSQQPINRKINEMNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208382_10322871	3300025369	Freshwater	LNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0207957_10167921	3300025372	Freshwater	PINRKINEMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIVCSITESAQELEDWTSTKSVH
Ga0208256_10030227	3300025382	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH
Ga0208256_10240264	3300025382	Freshwater	LKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSKKSVH
Ga0208250_10211153	3300025383	Freshwater	MNDYADIILKLNSFIKHYHDAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH
Ga0207956_10040128	3300025385	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQ
Ga0207956_10110184	3300025385	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSKKSVH
Ga0207959_10127034	3300025387	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSKKSVH
Ga0208380_10236454	3300025392	Freshwater	ILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208380_10651712	3300025392	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSIT
Ga0208874_10142514	3300025396	Freshwater	QQPINRKINEMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208874_10177291	3300025396	Freshwater	QQPINRKINEMNDYADIILKLNSFIKHYHEAVLEGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208387_10526733	3300025400	Freshwater	SYTMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208745_10088914	3300025403	Freshwater	LKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208378_100191617	3300025407	Freshwater	MNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESA
Ga0208746_10147881	3300025423	Freshwater	DIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208500_10240821	3300025429	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSITESAQNLE
Ga0208618_10048503	3300025435	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH
Ga0208742_10089821	3300025437	Freshwater	SQQPINRKINEMNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208742_10100534	3300025437	Freshwater	NLAHRTSQQPINRKINEMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208106_10473651	3300025449	Freshwater	SVKMETSSSSFKSRNLAHRTSQQPINRKINEMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208744_100381511	3300025450	Freshwater	TTRKSYTMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSV
Ga0208260_10038481	3300025467	Freshwater	IKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208379_11187531	3300025598	Freshwater	RHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208379_11359592	3300025598	Freshwater	TNRKSHSMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSV
Ga0208741_100171624	3300025723	Freshwater	MNDYANIILKLNSFIKHYHEAVLKGKYSQAYLIACSITE
Ga0208388_10028639	3300025778	Freshwater	KHYHEAVLEGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208386_100083218	3300025781	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTS
Ga0208867_10145121	3300025782	Freshwater	SRNLAHRTSQQPINRKINEMNDYADIILKLNSFIKHYHEAVLEGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208498_10365821	3300025785	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITES
Ga0208499_10444871	3300025789	Freshwater	RTSQQPINRKINEMNDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0208872_10698251	3300025838	Freshwater	MNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQ
Ga0316217_102226541	3300031813	Freshwater	LKLNSFIKHYHEAVLKAKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0316218_10212055	3300032117	Freshwater	MNDYADIILKLNSFIKNYHNAVLKGKYSDAYVIACSITESAQHLEDWTSTKSVH
Ga0316223_10338921	3300032560	Freshwater	NLANRTSQQPINRKINEMNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0316223_10611994	3300032560	Freshwater	MNDYADIILKLNSFIKHYHEAVLKAKYSQAYLIACSITESAQELEDWTSKKSVH
Ga0316223_10970821	3300032560	Freshwater	LNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH
Ga0316226_11093804	3300032562	Freshwater	DIILKLNSFIKHYHEAVLKAKYSQAYLIACSITESAQELEDWTSKKSVH
Ga0316232_11668874	3300032605	Freshwater	ILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH
Ga0316225_10316724	3300032675	Freshwater	RTSQQPINRKINEMNDYADIILKLNSFIRHYHEAVLKGKYSQAYLIACSITESAQELEDWTSTKSVH
Ga0316229_10383071	3300032676	Freshwater	NDYADIILKLNSFIKHYHEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH
Ga0316227_10347611	3300032677	Freshwater	HEAVLKGKYSQAYLIACSITESAQELEDWTSSKSVH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090055

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences