Scaffold G310J44882_10002956

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10002956
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6689
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F034813	Metagenome	173	Y
F068426	Metagenome	124	Y
F083691	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_1000295612	F068426	AGGTGG	MNTWDFVIKELKSLQQGFEDSQPIVELYVEQILLKGYKIIK*
G310J44882_1000295615	F034813	AGGA	MSYDSDFESVYMVEFESGRTIHVQFFDVQEVKEYCADNHAGDVIKSIYKEVYCNFAEAE*
G310J44882_1000295620	F083691	GAG	MGISCYKEVTVWNNPEFRVPQNVYLFDGKSNALAYVKESNGEIFIFKKPLPIDTRRRKFIKVKHKELDSYGATVVLEEPDLSNTPHWTVKSDSGKTYTVTLESGRYTCNCIGFAYKNKCKHSEGIKKAQEK*
G310J44882_100029568	F006060	GAGG	MLKFEGVATVGDIIRAYDFKPCAGRDDAFIEGVVEKANCNESGFNSYKVTVTVDKFKKYETKPNPRNRVGQIVFVPHQTSFHEFDFRVVNLSKV*