Scaffold G310J44882_10000631

Overview

Basic Information

• Taxon OID: 3300002933
• Scaffold ID: G310J44882_10000631
• Source Dataset Name: Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16992
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011648	Metagenome / Metatranscriptome	288	Y
F017467	Metagenome	240	Y
F023062	Metagenome	211	Y
F065407	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
G310J44882_1000063110	F023062	N/A	MIMSFEIDPVKYGVLWNKVETYEAKFDELSKKIDKMETSIESLVAMANQSRGALWVGIGLVSTFSAFVGFVINWLHNK*
G310J44882_1000063122	F011648	AGGAG	MSEQDQDFNNFQQHLERIFKDIEDGVFLSADEIGDLRYACGLPARNTHVNPVLRDVINDFGNVFGLQNFPTIRGKK*
G310J44882_1000063127	F017467	N/A	LKHEEYLVSWYIAVAKKRGWPEVVRLLAQNKETEDRMKMLIKKRLGK*
G310J44882_1000063132	F065407	AGGAG	MFTFDEQFKKYEEVLDRTKQAYEFWYNCLVSTWKDFYKTYK*