Scaffold Water_101975

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_101975
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3662
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F042877	Metagenome / Metatranscriptome	157	Y
F072209	Metagenome	121	N
F097254	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Water_1019751	F072209	N/A	RGNLTPQNAWEEGTNIRTALRLHPQATRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEMPAFKLEEFALVFESIKRNKFGPMYGRLKLGELLECCRKWEEMRAERILERKHRPEHDPFQRHSGTREERKAILVTVEDLIDLGQIKPPE*
Water_1019752	F042877	N/A	MIQGILVAIAILTFAQVGAEYYQEHQVRLFNLVILVLSCLALFL*
Water_1019754	F009330	N/A	VTLDGYLARNYDELLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTHIEERLSELPWFDAEVFAIYFEDGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDRGGNKGDGDR*
Water_1019755	F097254	N/A	MFPGRNVEMDAHDVTAFEELLPAIERGRLNRSQSRTMYDIFNRTFNAKEKPCNCTGKNKRMVEKLQRAYEFSCR*