Scaffold Water_100146

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100146
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16544
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (34.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F029927	Metagenome	187	Y
F036970	Metagenome / Metatranscriptome	169	Y
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063642	Metagenome	129	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10014616	F009330	AGGAGG	MTLDRYLARNYEDLSQAAQRIAGRDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTIIEERLSELPWFDAEVFAIYFEDGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDRGGNKGDGDR*
Water_10014618	F042877	N/A	MIHGILVAILVLTFAQVGVEFYQENQVRLFNLVVLLLSCLALFV*
Water_10014620	F009856	N/A	MKYWFDTDDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGIKEMAEYLPFLTPSKIKRALVKLEEVEAIYRKPNGFDRRHTYCLGTIPYHAWDKTEPSISQNRTIDGPNLDRVHIETNTFKRTESNAREELDFQRPTEEEVIEYMEDRGAHDLAATLGPSFWNYYEANGWMVNGTPIAKWKPKANQWINTERNKRSNDRRKGFNPEGFTPDGLKDFIAHG*
Water_10014621	F048232	N/A	MRTDITYEERVARIMFLREHRRNLLTAYCEEGVSKKEKDKLRLETARVQKALRKLDPDGMFPP*
Water_10014624	F036970	N/A	MTKYREWFAAVNRAIVAEMAVQKKTQRQLAEELGVHVVTMNRKLKDPGLFTVGELGQVCESLSINPQNPQTYGTGAN*
Water_10014625	F063642	N/A	MQYTSTQLFDEVIQLATPQCVTNRDMTLVRKLKDLQNYTQRLEKIADDAVEILKEKS*
Water_10014627	F091789	N/A	MIEVFPFRRCKTWQEAKEEWGWLMRDKGLQQINRPPAIGYGEAPDLVTSKVEGPGFVIYPNGYDPREINHTLSSRASIYGEGYCGTLNPF*
Water_10014628	F029927	N/A	MKPVNTKSLFHVLCTTLEKLDSAEINVNQASATAKLVGQCTNLLNYELKRAALMTNDDFRHAHRNLESKNFDSLPE*