Scaffold Water_100132

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100132
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17473
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (21.62%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F009330	Metagenome / Metatranscriptome	319	N
F015079	Metagenome	257	Y
F024541	Metagenome / Metatranscriptome	205	N
F029927	Metagenome	187	Y
F036970	Metagenome / Metatranscriptome	169	Y
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063638	Metagenome / Metatranscriptome	129	N
F063642	Metagenome	129	N
F072209	Metagenome	121	N
F091789	Metagenome / Metatranscriptome	107	N
F097254	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10013210	F029927	N/A	MKPVNTKSLFHVLCATLEKLDSAEINVNQASATAKLVGQCTNLLNYELKRAALMTNDDFRHAHRNLESKNFDSLPE*
Water_10013211	F091789	N/A	MISVPPYRCKTWSEAKREWGWLMRSKGLQQINRNAPTGYGEAPDLLKGKVEGLGFVIYPRDYDPREATHTITTRSPIYGNRYCGTLNPF*
Water_10013213	F063642	N/A	MEHTVSPLFDEVIQLATPDCINRRDMTLVRKLKNLQEYTVRIEKILEDAKSIIEDHAK*
Water_10013214	F036970	N/A	MRIFCIYPNLFLIFAQIKHNTMTKYKRWVTAVNRAIVAEMAMQKKTQKDLAEALSIHPVTINRKLKDPGLFFVGELGLLCDTLNIDLKNPPNYGTGAN*
Water_10013215	F015079	N/A	MVQAQIESIQGKGDWKGKHGTMYTFEVAFNDGTVGEANAKSQEPPYKVGDEAYYEIKTDDQFGKKLKISKNPPPPGGFQQFQPKANPNKDKQIIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVITLAKKYEKAFNEWMEE*
Water_10013216	F048232	GGA	MSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKNKLRLEIARVQKALKELDPDGMFPP*
Water_10013218	F072209	AGG	MASRTLSLTDSTQLLLKGDSRNLTPQNAWEEGTNIRTALRLNPQMVRAWFLAELGRLIKFVDATKTIQDDEEMKETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHAGTREERKAILLTVEDLIDLGQIKPPE*
Water_10013219	F042877	N/A	MIHGILVAIAVLTFAQVGVEYYQENQVRLFNLVVLLLSCLALFV*
Water_1001322	F001668	N/A	MATVYLPVEPIEGMDSAERAEALDAEVWRLRRPLSLQSPQDITKFYYPRITHPETGQVAIVGDTTEEVRISPEVDLTDMLALLPEVPQEEKDGLVMFIDANRGGSVPFGQLIPSTSTQLTQEEAEALGWLPDPIEP*
Water_10013221	F009330	N/A	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFSRHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRQDRKADEGDGNR*
Water_10013222	F097254	N/A	MDPTDVTAFEELLPAIKSGRLNRAESRTMYDIFNRTFNAKERPCSCTGKNKRMVDQLQRAYEYSCR*
Water_1001325	F063638	AGG	MLDTLDTLTAVIDTVATVVTDPIILDPMEPWYVTHYVELIFIVLAATKAVLNLVPSEKPLVIFGYLDTLIGLIFKDRRK*
Water_1001328	F024541	N/A	MEFFEMIISQYGSVHRCAKKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVKWEFRYHKENTNA*