Scaffold Water_100008

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100008
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49744
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (88.75%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001094	Metagenome / Metatranscriptome	780	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F006653	Metagenome / Metatranscriptome	367	Y
F007691	Metagenome / Metatranscriptome	346	Y
F009331	Metagenome / Metatranscriptome	319	Y
F029046	Metagenome	189	Y
F034113	Metagenome / Metatranscriptome	175	Y
F082579	Metagenome	113	N
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1000082	F034113	AGGAGG	MALTPSYTTSTEATEVEQTYIDKGAVKMPQINPMVDAKYAAGKAQALATDKVEWPTKVAGLTN*
Water_10000832	F001094	AGGAG	MNKEKLIAIAGTYLRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKSAEFGRGSK*
Water_10000837	F082579	GGAG	MEDEVKYIHMTDEYAAQYWHQQGWLACRLAYKLYNDAQDAGAFRV*
Water_10000842	F006653	AGGAGG	MSEGQLTNKYRDNLKTDGLRADVDALKVDLTNFVGALLQSGIVELVKDEEGNVIYKINKVVLVDESVQQD*
Water_10000845	F009331	AGGAG	MMCDNCLKGGEENGLAHYKRSAHWHDKCDDKGCVCQHKTGPGYIKREGIKVPLMQTQSP*
Water_10000848	F003784	GGA	MYDNDRERVGHNATDFATYGLSHLAPRQEDSDNTHTPPASTPLVDHLAVIGYRSIGVSTEDLTSFIEAFASLRAMRVKGVGHSQYAIAQGQKFESFTTADTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE*
Water_10000849	F004110	AGGAG	MAWAMTRIADHTEDLMEIDENKRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYETPKLGMLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPSEGGNLLANLIDIKRGYLQLEQDDQMLLRLRHHEGFTLQQIAQVLECATSTADRRCDKSLRRLQDNLGGISPWQ*
Water_10000855	F083901	GGAGG	MTQPTKSKSVLTYRTYRKARDRSLIRLSHLYPDTYKQLLAIERKFDEQEGKDWTGIDELINLSVGTHTRANGTPPFGDPADAGEDEGNYGGEA*
Water_10000856	F001477	GGAGG	MSNVISFHPKKSSLVLLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*
Water_10000858	F000821	AGGAGG	MNEEYLAAKANLCLNQAEKDLKQEEIVNAIKNLERANSALYRLGLVREGEADE*
Water_10000859	F003212	AGGAG	MKDKWLVTLEIDTYDGNPGDWDWEKLSTGLDAVKIISSEFKGVVRPLEKEEKYE*
Water_10000863	F029046	GAGG	MNLAEIDTLQDLKVWVKENMPNATVYEDMFGTLVIRTNLISTMGGYLHEKEAEDE*
Water_10000866	F007691	AGGAGG	MMDTLEQLINEIHEDNYSHLEFNENMGGEGCKCDIHTTLNTIVKYRDKEGE*