NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Pfgo_1036812

Scaffold Pfgo_1036812


Overview

Basic Information
Taxon OID3300002925 Open in IMG/M
Scaffold IDPfgo_1036812 Open in IMG/M
Source Dataset NameHot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Illinois, Urbana-Champaign
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3065
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs Facies → Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.9766Long. (o)-110.7016Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044988Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Pfgo_10368124F044988N/AMSTLSIEMLTPERVIELWPVLEPYFDAACKGNEIASDEMNAKDIYVLAVTGMVAVIVGFEDNEPACVLCIQFHNTNGRKGADVVALAGRSLLKFKAAYWRTILDWLKANGVEFLDTYVPMQRARLYMKRFGFNKSCAYIRMTLQGEKDEQSC*

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