Sample 3300002925

Basic Information
IMG/M Taxon OID	3300002925 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111484 \| Gp0097887 \| Ga0052913
Sample Name	Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO
Sequencing Status	Permanent Draft
Sequencing Center	University of Illinois, Urbana-Champaign
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO

Sequencing Status

Permanent Draft

Sequencing Center

University of Illinois, Urbana-Champaign

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	172800543
Sequencing Scaffolds	21
Novel Protein Genes	28
Associated Families	24

Dataset Contents

Total Genome Size

172800543

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Drosophila → virilis group → Drosophila virilis	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Drosophila → virilis group → Drosophila virilis

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs Facies → Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Ecosystem Assignment (GOLD)

Name

Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs Facies → Hot Springs Facies Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → calcite hot spring → rock
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → calcite hot spring → rock

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.9766	Long. (^o)	-110.7016	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.9766

Long. (^o)

-110.7016

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004791	Metagenome / Metatranscriptome	423	Y
F007033	Metagenome / Metatranscriptome	359	Y
F007404	Metagenome / Metatranscriptome	351	Y
F007753	Metagenome / Metatranscriptome	345	Y
F011301	Metagenome / Metatranscriptome	292	Y
F015737	Metagenome / Metatranscriptome	252	N
F023603	Metagenome / Metatranscriptome	209	N
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F039968	Metagenome / Metatranscriptome	162	N
F044249	Metagenome / Metatranscriptome	154	N
F044988	Metagenome	153	Y
F054062	Metagenome / Metatranscriptome	140	N
F055751	Metagenome / Metatranscriptome	138	Y
F056639	Metagenome / Metatranscriptome	137	N
F065815	Metagenome / Metatranscriptome	127	N
F068874	Metagenome / Metatranscriptome	124	N
F070754	Metagenome / Metatranscriptome	122	Y
F073593	Metagenome / Metatranscriptome	120	N
F075398	Metagenome / Metatranscriptome	119	N
F080677	Metagenome / Metatranscriptome	115	N
F081382	Metagenome / Metatranscriptome	114	N
F087247	Metagenome / Metatranscriptome	110	N
F102748	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Pfgo_1001202	Not Available	1412	Open in IMG/M
Pfgo_1010969	Not Available	973	Open in IMG/M
Pfgo_1021440	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Brachycera → Muscomorpha → Eremoneura → Cyclorrhapha → Schizophora → Acalyptratae → Ephydroidea → Drosophilidae → Drosophilinae → Drosophilini → Drosophila → Drosophila → virilis group → Drosophila virilis	808	Open in IMG/M
Pfgo_1028004	Not Available	808	Open in IMG/M
Pfgo_1034591	Not Available	972	Open in IMG/M
Pfgo_1036812	All Organisms → Viruses → Predicted Viral	3065	Open in IMG/M
Pfgo_1045787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5894	Open in IMG/M
Pfgo_1060749	Not Available	1928	Open in IMG/M
Pfgo_1064211	Not Available	13176	Open in IMG/M
Pfgo_1078224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2931	Open in IMG/M
Pfgo_1081570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium	1740	Open in IMG/M
Pfgo_1086648	Not Available	1298	Open in IMG/M
Pfgo_1099932	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
Pfgo_1101605	Not Available	2180	Open in IMG/M
Pfgo_1113441	Not Available	585	Open in IMG/M
Pfgo_1122071	Not Available	894	Open in IMG/M
Pfgo_1126054	Not Available	500	Open in IMG/M
Pfgo_1131923	Not Available	552	Open in IMG/M
Pfgo_1138494	Not Available	817	Open in IMG/M
Pfgo_1139021	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
Pfgo_1143433	Not Available	635	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Pfgo_1001202	Pfgo_10012021	F055751	LHEIIEQSSDTYVQVRYQRKRFFRDRARPAIDFSADNTIIWRFPDSLRVIDISKAPSRVFAQYRGYEIDHLTTTVNIASLESRRQLAQRTASVGEYSNQTNAEIKRNEAAVAFERQIAPLSINLDNTRYELMTASGVTIPNWAADVSDYAIVPGYFRNAKITSRTITRDRTTYTVSFDSDDFVTALGG*
Pfgo_1010969	Pfgo_10109692	F065815	MQPETNNPNPQANQPTKSTEETSVTDAKKNNTSTPEVEQQSKSGFYQDLNSVLLVTILSLLIYTIVGSGLSWIVSWGLAQANLYPWVFNQSPILLWAIFGLVSMLIIGVIMVQVESLVETRILPKLQKFSQPTLLLVNFLVLLGLILGMYWLVSNFVNYLNITFWLK*
Pfgo_1021440	Pfgo_10214401	F070754	PFDPLTGTLILAPLDRYQIRIKERYFVVIEPLQGAMDNPDPNAFVTAYSGSWGTGGTFSMNLLGQDFEQEGFAVGDEVFVSLHWVGGIAFYHCNIIGLNGTSATFSIIQSTGPSGTTPNIQNPLAATIILLSERTEIKPSFHFGNNSGPTSPLSALPFASPHADAIKAYTSPATADLPSPLSYNLQKYSSGFEGLFVSAGTNLLGYSPLDFRRRAIIIEGTQFYAYRTNLDPQAQAPTSLYALDGRIEVLLQAPVAGRDAALTFPCIL
Pfgo_1028004	Pfgo_10280041	F070754	PFDPLTGTLILAPLDRYQIRIRERYFVIIEPLDGTLDGPGPNAFVTASSGSWGAGGTFSMNLQGQDFEQEGFAVGDKVYVLLHWAGGWSGVHASFHCNIIGINGASATFSIIQSTGPTPNIQNPLSATIILLSERTEIKPSFHFGNNSGPNSPLSALPFPSPHADAIKAYVSTANADLPSPLTYNLQKYDTHEASIASEGNALFGYSPLEFRRRAIIIEGTQFYAYRTNLDPQAQAPTSLYALDGRIEVLLQAPVAGRDAALTFPCLL
Pfgo_1033663	Pfgo_10336632	F015737	LVSATIPTEKTKLNPKTAFQQTLLNWQEKQFTTELIPEILKKGELTTDLEDFALFYGIKVLAILNQDILNTQLGSTEWQLPETTTTPGSLSTKPNILVLTSEIYAPLFINLNCDYLPISEDLPELLKAVTQIITNNPEIKLILINSDNERIETYLHKHLTSNVLITTIEFTKFAQDAFFDNLVRKTLGVRLT*
Pfgo_1034591	Pfgo_10345913	F007404	MELIDIFQILAAGHQHLTALDYLYNALAGAIGALTAYLADNEGEVFLPHYDRGHHSVELGALGRVLTGAGAGVIVGYSGFVPFAAGIIAPAILPFALDKLMERFGGKQK*
Pfgo_1036812	Pfgo_10368124	F044988	MSTLSIEMLTPERVIELWPVLEPYFDAACKGNEIASDEMNAKDIYVLAVTGMVAVIVGFEDNEPACVLCIQFHNTNGRKGADVVALAGRSLLKFKAAYWRTILDWLKANGVEFLDTYVPMQRARLYMKRFGFNKSCAYIRMTLQGEKDEQSC*
Pfgo_1045787	Pfgo_10457873	F068874	VFGRLRRVLRFHERVSLPDVPAQAQALSYSGRTIVSYPPSPAWAVREPLWLGRRGLGYYAPSTAKRKRRLGLPDREIVLFQTGKLYASIQVVNMKKYYLIRVERDKLAAIIRRFPVKRWLRVDAYAVRAGLGKALLAALLGCASLRKQRVIQSGEVAVRREEVVSHETLRLTTLLNDTVHLRNERLVIHYDTIHQSLRIEQVRPVVVVRDSVVRWNAMVQAPTWVAGAGEERRESWWRRWGRGALALMLGLGFLAFIGYLWLRALRIG*
Pfgo_1045787	Pfgo_10457874	F007033	RRIAFETELFASNQPADFNLFSTSVYTDALRLMTPILYNVESERPESVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQFRCLSRLGVFLIDDAGVVWGRRNKPDSAAPIPIEPGTVQVRLLFPSDSAITKYEFSFDFAQSLMDFELVPVFADSQLLSYTPPIATRLDAEWNSPGLLAYIYALYARGAGNLYIPITGLASHLEVRDNANTLITASFTETAPGKYIANFTPPPPTTGNPYTVKIGSSAPPSAFDYTTAVAQFNV*
Pfgo_1060749	Pfgo_10607492	F011301	MQPQQYKNLPFQILHRFFHLVKLTHRSESAREFGNKFSDDELVIISHLEQAATDLRCANPELISHAKQILAKSAFVPEVSDFKRFLLACVELLLIEVMARQKNPALYDFLYSDTLWYFHNRDKLPNETAIEIEAYLAYGNPCQTPEDGQKEEKWFEEIVAYSQKRPSSVESFIREKIQQMPEYERNDFLHSRSMKNWTKKWHAEYCKVKKRVSMRSFQNRVSELRKEERMKNQNGH*
Pfgo_1064211	Pfgo_106421113	F039968	MTSFDSIFLFKKKPGTTSAFILEKRQGELFAPLETENSNGEKVCYLTKIQGKTNAKRRPTWNLSIPIINAKKFWFKKVNLSGVFIPVPEVPNKGFGDCKHTGNIYLFLIGENFETLTILVFRNQFLTVAEVLFTQFLDGEFDTEIAEFMEAEPSKLRRLC*
Pfgo_1072534	Pfgo_10725342	F087247	DGSVAFHIRLCKPLPDSSDNLMALRINFADSQIVAPLYGYSYACADGKVSPGQAAIVGYEAPGKELILSRLSVVVRKDVVTIAVSASEVPLLGRDLLEVYSFYSPREHGCLSLVEVICIDKELLGSSRPLVMPPCVQ*
Pfgo_1078224	Pfgo_10782246	F054062	MGTLRQLRWKDFCEGLEKDPPEDVQKEAERIFFDHVFPEAVLTFFQNASELLLLYEASLSAPAMRPIADAKFEELFKQNPIPFYESLVPVLKNLGADPEHATFLEICAFLTTYKS*
Pfgo_1078224	Pfgo_10782247	F023603	MLYTTADFAGQYRLDSNAITQTDYQNAIDEHERTLLEYFFDAGSVGKIYAVLPTQPPAVGVRNMMRDLALPFIFGRIKMGVGSSMAGEPHTQGYTRIGYTPFLAWRGSDTLRKLIRFAPFVVQAELTSPAATIPYPSPIPQAPDFVAIGDPVTAYTSSGEVQTTVVGVTAADITLAATLPIGPVRLIVENLRLRLMQVYMTF*
Pfgo_1081570	Pfgo_10815702	F039968	MKSFDSIFLFRKKPGTTSAFILEKRQGEPFAPLETENSKGEKVCYLTKIQGKANAKRRPTWNVSIPRINARRLGLRTENLSGIFIPVPEVPNKGYGDCKFTGNGYLFLIGEKFETLTILVFRNQVSTVEQVLFTQFLDGEFDAEIAEFMG*
Pfgo_1086648	Pfgo_10866481	F038584	HIRQQLRDRSPNAGTRIKTSELRSARKMMQRYLRKTTTGGNRPPEYIGEAFYVQRQPVIEFVQDYLRTETREVLSDITQARISPFSGFPTSVPENAIKTPMSTSPNKVSATYNKLAFTDLITDEVILAYPDIVDFLIWHGAYRLEVLLHENLVSALAVASVGAVLPTGIPSPQVVDLLIYMRAFHDQNAAIGPQGDWPATAAIVPFPYYWRLRYGGLKSTTGEYLQLDRQLDGLALIARGTAQTDPTIVFNQNELEVFFLGDITVNFGRVVDAASDSNVRRLTMDLFYVPMPHVGRPVSVGNTQTAIASME*
Pfgo_1099932	Pfgo_10999322	F056639	GIPPALVVATIAQGTVFRGLPTAMLLWGYSVCVGALWILGTLAIAYGQTTRFYGASRDWVRWQNILALAAALIVATLAAVSVPAPVSAPALTEWAHTPLWWWGFVPPLGIVSGLAVGFHPLWTLSHLAGTLLWGVLGAVGCLRLLRGVWRSQEQPLNAETEGWE*
Pfgo_1100846	Pfgo_11008461	F102748	VDELIRAICCGRYNRSAVGFSPKPSVASRLAVVFLVYTVTLLCVQPTVTDSASQHTQEVRVYKVRVDYTATIRYTDERGEVQEKSAQRACEFVFDTPISFEEALSLIDGAFVTGVSSHDSLIHDVTEACSEPCCGVWCCWLGRNSKEWAWKPD
Pfgo_1101605	Pfgo_11016051	F024322	MSLLQKLRNARQKRYLRLVNPTLLQYEFCPVWANYLNPPSPVQVDTSAGTLTIQTGVVRSFAREYDKSTYAFPFTAGEWVAFYPPPIFVAHYSEFSQIAARMPHAFMVVVPDARMGKSEWGEVEHEAFFLAPAQDSEDFETQLDRIAGVRESLMELWPEKVSFTEIIPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV*
Pfgo_1101605	Pfgo_11016052	F044249	MTKREALLTLLSASLTVVAEKYLAVLTALIILGSLTNFLGAICAIKNGEGLRATKILYGTARLAFYLIFYLALLMALERVASYLIPPLLSVAVIYEAGLALRKAVQLNIVPAGLVRQLTKTFRHEPPTKTP*
Pfgo_1101605	Pfgo_11016054	F038584	HIRQQLRDRSPNAGTRIKTSELRSARKLMRRYLRKTNLGTAPPTGYVGEAFYVQREPVIEFVQDYLRTETREVLEDIVQARLNPFTGAPTTVAEGAAKPLLQTSPYKISATYNKLAATDLITDEVLLAYPDIVDFLIWHGTYRLEVLLHNSIITALNAASAVATVPTGIPSPQIVDLLIYMRAFHDQNAAIGPQGDWPATAAIVPFPYYWRLRYGGLKSTTGEYLQLDRQLEGLALIAHGTLQTNPTIVFNENEFEVFFLGDITVNFGRVVESTNDSNVRRLTMDLFYAPLPHAGRPVYVGDTQATIAAM*
Pfgo_1113441	Pfgo_11134411	F007753	VNTCATSDELGFYTAHKPGALTRYFARRWLQGGNTKRNRQIIAWLLENALGRNTLYFIEKTEEYIDEWRGSGEVVPVNAFDGFVLTGDPVEDTIIPHAIFVWRYMNDQPWSEEVYHRWLDKLLAAGSAEAAYLAASLWPAHDLMEKVTYRPAAWLV
Pfgo_1122071	Pfgo_11220712	F004791	MPEPAKIYDVDAVRVDPLAGILVF*SNMPEPATIYDVDAVRVDRSVLTIREAATLLNRELTAPVIARLVRKAIGDQADRFPIRALKSVYERVLPRIFEPDETIRSRVGGLIPNITTITLGEYHQFLEASERNVAFPEVAQTLLVKAYGDSILDEPYAAASLLLKFQSP
Pfgo_1126054	Pfgo_11260541	F080677	MVTLPIFRSWLTSKIIVLQSPKLVRKITIGAMFSLLLAVMLTPVSVDQQTTFASEARSDSTTELPIVKQSTETVPLIIKLISSL
Pfgo_1131923	Pfgo_11319231	F073593	LSLLVHAQTTTSSNPTENNPILSQLSGLNILQNVCIYPGFPDPSCNRDNSILLTVWEYLIRFVAVIGGFTFIYAGYLTMMDKYEQAKKIMSSIVQGVFATLLINAAINLIVESAFPKIGNSQCPSAEQVVRSNIFGDYCINLDINPVIDFTIVVINNLILPASAIIAALFFLAGLYNLLISGG
Pfgo_1138494	Pfgo_11384941	F007033	RRIAFETELGGSIVPTDFNLLTSAYYANARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQFRCLSRLGVFLIDDAGVVWGRRVDFNAAGPIPIEPGTVQVRLLFPSDASITKYEFSFDFAQSLMDFELVPVFADAGLLNYTPLIAAQLSATWQVPGIGVAIYALYARGAGDLFIPITGLASHLEVRDNANNLITATFTEAQPGIYTANPTPAPPASGNPYTVKVGPSAPPGAFDYTTAVAQFNV*
Pfgo_1139021	Pfgo_11390211	F081382	MSRHGEVLEIAILPAGGRAKQVVQRALGKRRAHIRVHSLCDIADASVPMLALIDGSALQGGESALAEVITLLQQSAWRDAPIVILDDSGADLRRGFAVGYAARIRLDSSPEAIAQLIDRMLHTA
Pfgo_1143433	Pfgo_11434332	F075398	MTAHFKSVRFAFGASVGLLGMALMSTGYARVDKAPTFQTDPYPFVENRGQLADPEGRPLTEAYFTFEAAGMRGYVTKWGLTLFFYRLERDKVERDGDGRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002925: Hot springs facies microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA - MHS-Pond Facies_GO

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences