Scaffold JGI25386J43895_10031212

Overview

Basic Information

• Taxon OID: 3300002912
• Scaffold ID: JGI25386J43895_10031212
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1570
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028852	Metagenome / Metatranscriptome	190	Y
F077083	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25386J43895_100312121	F077083	AGGAG	MRRVLEKSFLIMMVVGGLTALGKPASAYVAHVLTSIPVASSEGRELEDAVRTAINDVLEHAIAFVPTLVDVRDARVVGDRISILLLLADDDXAAIVQRLXXGSADEL*
JGI25386J43895_100312122	F028852	AGGAG	MRIIHVALVLVLVVLAAPAWGADLDRWFHVSWGPAPHGNTPKRRIQASVRNDSPYRVTDVQLEVEGLTPGERSAGRRVVWALGDIEPGGESSFVTEAMDGAVTYRITVTSFDLVSVGSMH