Scaffold JGI25388J43891_1006499

Overview

Basic Information

• Taxon OID: 3300002909
• Scaffold ID: JGI25388J43891_1006499
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2307
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013999	Metagenome / Metatranscriptome	266	Y
F025001	Metagenome / Metatranscriptome	203	Y
F094175	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25388J43891_10064991	F025001	GAGG	MIQDSTLHLVVALIGALALVTLALAVFLPQAAAGRHCSESRTENEPELSLLAARVPISEIRDGLIVRRDGSFCAGWECSGIATQFASAERLEAVSSALDAFIKGIRHPEIELQFRYVIDYETSRVLEARKALGCANSPAAWLEDNRLSFWRSAIDAGHMRSIRFLAFLSWKPKHTWETSSAASRFAAAFWQGLIQDGLRKLPRVLRTAVKEMRTKALVQRNREEHHRLAAEFHQILETYRVGLEAIAPVRRLSEPELVELVYH
JGI25388J43891_10064992	F094175	GGAGG	VIAWAIIMRLLGDHIHRVFFGFVPVSTVMTYGSAALLVLLIRWAKHGKPRGYLVSWIQHYFRSKAHNARCGAPNVPYLIEDEQ*
JGI25388J43891_10064993	F013999	AGGAGG	MFGVISRKPRIELNRFSRAIGSGVGMLLLASPAFAQIGGDRVSSFLSNALSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG*